Citation: Ajay and Bhalla, in preparation
Figure: 4CD4CD4CD4CD
Is theoretical:	Yes
Experiment type: time series

// This special file has 40 compartments, each of which has been run
// to settling, and the first and last compartments have all molecules
// buffered to their initial values. This is to prevent end-effects.
Model: pkm_mapk22_transp_endbuf_D1e-13.g
Plotdt: 10
// TransientDT:
// TransientTime:
SettlingTime: 2000
RunTime: 3600


Stimulus: chain/kinetics[10]/Ca Buffer 0.08
Stimulus: chain/kinetics[10]/Ca CoInit 20 0 5
Stimulus: chain/kinetics[10]/Ca CoInit 20 300 5
Stimulus: chain/kinetics[10]/Ca CoInit 20 600 5

Stimulus: chain/kinetics[11]/Ca Buffer 0.08
Stimulus: chain/kinetics[11]/Ca CoInit 20 0 5
Stimulus: chain/kinetics[11]/Ca CoInit 20 300 5
Stimulus: chain/kinetics[11]/Ca CoInit 20 600 5

Stimulus: chain/kinetics[12]/Ca Buffer 0.08
Stimulus: chain/kinetics[12]/Ca CoInit 20 0 5
Stimulus: chain/kinetics[12]/Ca CoInit 20 300 5
Stimulus: chain/kinetics[12]/Ca CoInit 20 600 5

Stimulus: chain/kinetics[13]/Ca Buffer 0.08
Stimulus: chain/kinetics[13]/Ca CoInit 20 0 5
Stimulus: chain/kinetics[13]/Ca CoInit 20 300 5
Stimulus: chain/kinetics[13]/Ca CoInit 20 600 5

Stimulus: chain/kinetics[14]/Ca Buffer 0.08
Stimulus: chain/kinetics[14]/Ca CoInit 20 0 5
Stimulus: chain/kinetics[14]/Ca CoInit 20 300 5
Stimulus: chain/kinetics[14]/Ca CoInit 20 600 5


Response: /kinetics/MAPK* Conc

Response: chain/kinetics[0]/MAPK* Conc

Response: chain/kinetics[1]/MAPK* Conc

Response: chain/kinetics[2]/MAPK* Conc

Response: chain/kinetics[3]/MAPK* Conc

Response: chain/kinetics[4]/MAPK* Conc

Response: chain/kinetics[5]/MAPK* Conc

Response: chain/kinetics[6]/MAPK* Conc

Response: chain/kinetics[7]/MAPK* Conc

Response: chain/kinetics[8]/MAPK* Conc

Response: chain/kinetics[9]/MAPK* Conc

Response: chain/kinetics[10]/MAPK* Conc

Response: chain/kinetics[11]/MAPK* Conc

Response: chain/kinetics[12]/MAPK* Conc

Response: chain/kinetics[13]/MAPK* Conc

Response: chain/kinetics[14]/MAPK* Conc

Response: chain/kinetics[15]/MAPK* Conc

Response: chain/kinetics[16]/MAPK* Conc

Response: chain/kinetics[17]/MAPK* Conc

Response: chain/kinetics[18]/MAPK* Conc

Response: chain/kinetics[19]/MAPK* Conc

Response: chain/kinetics[20]/MAPK* Conc

Response: chain/kinetics[21]/MAPK* Conc

Response: chain/kinetics[22]/MAPK* Conc

Response: chain/kinetics[23]/MAPK* Conc

Response: chain/kinetics[24]/MAPK* Conc

Response: chain/kinetics[25]/MAPK* Conc

Response: chain/kinetics[26]/MAPK* Conc

Response: chain/kinetics[27]/MAPK* Conc

Response: chain/kinetics[28]/MAPK* Conc

Response: chain/kinetics[29]/MAPK* Conc

Response: chain/kinetics[30]/MAPK* Conc

Response: chain/kinetics[31]/MAPK* Conc

Response: chain/kinetics[32]/MAPK* Conc

Response: chain/kinetics[33]/MAPK* Conc

Response: chain/kinetics[34]/MAPK* Conc

Response: chain/kinetics[35]/MAPK* Conc

Response: chain/kinetics[36]/MAPK* Conc

Response: chain/kinetics[37]/MAPK* Conc

Response: chain/kinetics[38]/MAPK* Conc