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Molecule Parameter List for CaMKII-PSD | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by  color. | | Statistics |
Accession and Pathway Details | |
| Accession Name | Accession No. | Accession Type | Pathway Link | AMPAR_traff_
model0 | 59 | Network |
Shared_Object_AMPAR_traff_model0, CaMKII, CaM,
PP1, PP2B, PP1_PSD,
PKA, AC, AMPAR,
AMPAR_memb | | This is model 0 from Hayer and Bhalla, PLoS Comput Biol 2005. It has a bistable model of AMPAR traffick, plus a
non-bistable model of CaMKII. This differs from the reference model (model 1) in that model0 lacks degradation and turno
ver reactions for AMPAR. |
CaMKII-PSD acting as a Molecule in AMPAR_traff_model0 Network
| Name | Accession Name | Pathway Name | Initial Conc.
(uM) | Volume
(fL) | Buffered | | CaMKII-PSD | AMPAR_traff_
model0
Accession No. : 59 | CaMKII
Pathway No. : 235 | 0 | 0.01 | No | | |
CaMKII-PSD acting as a Summed Molecule in AMPAR_traff_model0 Network
CaMKII-PSD acting as a Product of an Enzyme in AMPAR_traff_model0 Network
CaMKII-PSD acting as a Substrate in a reaction in AMPAR_traff_model0 Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| | Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | 1 | back_1 | AMPAR_traff_
model0
Accession No. : 59 | CaMKII
Pathway No. : 235 | 0.3
(s^-1) | 0
(#^-1 s^-1) | Not applicable** | - | Substrate
CaMKII-PSD
Product
CaMKII
NMDAR
| | | Rates set by the translocation experiments of Shen and Meyer, Science 1999. | | 2 | CaMKII-bind-CaM-
PSD | AMPAR_traff_
model0
Accession No. : 59 | CaMKII
Pathway No. : 235 | 49.9998
(uM^-1 s^-1) | 0
(s^-1) | - | - | Substrate
CaM-Ca4-PSD
CaMKII-PSD
Product
CaMKII-CaM-PSD
|
CaMKII-PSD acting as a Product in a reaction in AMPAR_traff_model0 Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details. |
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