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Molecule Parameter List for A_B

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
A_B participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences2306811

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
  • AMPAR_traff_
    model0
  • 59Network
    Shared_Object_AMPAR_traff_model0 CaMKII CaM 
    PP1 PP2B PP1_PSD 
    PKA AC AMPAR 
    AMPAR_memb 
    This is model 0 from Hayer and Bhalla, PLoS Comput Biol 2005. It has a bistable model of AMPAR traffick, plus a non-bistable model of CaMKII. This differs from the reference model (model 1) in that model0 lacks degradation and turno ver reactions for AMPAR.

    A_B acting as a Molecule in  
    AMPAR_traff_model0 Network
    NameAccession NamePathway NameInitial Conc.
    (uM)
    Volume
    (fL)
    Buffered
    A_B
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    00.09No
    A_B
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR_memb
    Pathway No. : 243
    00.01No

    A_B acting as a Summed Molecule in  
    AMPAR_traff_model0 Network
     Accession NanePathway NameTargetInput
    1
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    I_845A831*_B831*
    A_B831*
    A831*_B
    A_B
    2
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR_memb
    Pathway No. : 243
    Ser845A_B
    A831*_B
    A_B831*
    A831*_B831*
    3
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR_memb
    Pathway No. : 243
    Ser831A845*_B845*
    A_B845*
    A845*_B
    A_B

    A_B acting as a Substrate for an Enzyme in  
    AMPAR_traff_model0 Network
     Enzyme Molecule /
    Enzyme Activity
    Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    1actCaMKII-PSD  /
    CaMKII[3]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • CaMKII
    Pathway No. : 235
    90.00060.54explicit E-S complexSubstrate
    A_B

    Product
    A831*_B
    2actCaMKII-PSD  /
    CaMKII[7]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • CaMKII
    Pathway No. : 235
    90.00060.54explicit E-S complexSubstrate
    A_B

    Product
    A_B831*
    3PKA-active  /
    PKA[17]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A_B

    Product
    A845*_B
    4PKA-active  /
    PKA[20]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A_B

    Product
    A_B845*
    5PKA-active  /
    PKA[2]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A_B

    Product
    A845*_B
    6PKA-active  /
    PKA[3]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A_B

    Product
    A_B845*

    A_B acting as a Product of an Enzyme in  
    AMPAR_traff_model0 Network
     Enzyme Molecule /
    Enzyme Activity
    Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    1CaM_Ca_n-CaNAB  /
    PP2B[17]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A845*_B

    Product
    A_B
    2CaM_Ca_n-CaNAB  /
    PP2B[21]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A_B845*

    Product
    A_B
    3CaM_Ca_n-CaNAB  /
    PP2B[2]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A_B845*

    Product
    A_B
    4CaM_Ca_n-CaNAB  /
    PP2B[3]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A845*_B

    Product
    A_B
    5PP1-active_PSD  /
    PP1[2]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    0.9714510.174explicit E-S complexSubstrate
    A845*_B

    Product
    A_B
    6PP1-active_PSD  /
    PP1[3]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    0.9714510.174explicit E-S complexSubstrate
    A_B845*

    Product
    A_B
    7PP1-active_PSD  /
    PP1[11]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    2.000050.354explicit E-S complexSubstrate
    A831*_B

    Product
    A_B
    8PP1-active_PSD  /
    PP1[23]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    2.000050.354explicit E-S complexSubstrate
    A_B831*

    Product
    A_B

    A_B acting as a Substrate in a reaction in  
    AMPAR_traff_model0 Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    recycle__
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    0.0008
    (s^-1)
    0
    (#^-1 s^-1)
    Not applicable**-Substrate
    A_B

    Product
    A_B
    Anchor
    ** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration

    A_B acting as a Product in a reaction in  
    AMPAR_traff_model0 Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    recycle__
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    0.0008
    (s^-1)
    0
    (#^-1 s^-1)
    Not applicable**-Substrate
    A_B

    Product
    A_B
    Anchor
    ** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration



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