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Molecule Parameter List for A845*_B831*845*

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
A845*_B831*845* participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences2308611

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
  • AMPAR_traff_
    model0
  • 59Network
    Shared_Object_AMPAR_traff_model0 CaMKII CaM 
    PP1 PP2B PP1_PSD 
    PKA AC AMPAR 
    AMPAR_memb 
    This is model 0 from Hayer and Bhalla, PLoS Comput Biol 2005. It has a bistable model of AMPAR traffick, plus a non-bistable model of CaMKII. This differs from the reference model (model 1) in that model0 lacks degradation and turno ver reactions for AMPAR.

    A845*_B831*845* acting as a Molecule in  
    AMPAR_traff_model0 Network
    NameAccession NamePathway NameInitial Conc.
    (uM)
    Volume
    (fL)
    Buffered
    A845*_B831*845*
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    00.09No
    A845*_B831*845*
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR_memb
    Pathway No. : 243
    00.01No

    A845*_B831*845* acting as a Summed Molecule in  
    AMPAR_traff_model0 Network
     Accession NanePathway NameTargetInput
    1
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    I_845_PP
  • A835*845*_
    B835*845*

    A845*_B831*845*
    A831*845*_B845*
    A845*_B845*
  • 2
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR_memb
    Pathway No. : 243
    Ser845-PPA845*_B845*
    A831*845*_B845*
    A845*_B831*845*
  • A835*845*_
    B835*845*

  • 3
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR_memb
    Pathway No. : 243
    Ser831-PA831*845*_B845*
    A845*_B831*845*
    A831*_B845*
    A_B831*845*
    A831*845*_B
    A845*_B831*
    A831*_B
    A_B831*

    A845*_B831*845* acting as a Substrate for an Enzyme in  
    AMPAR_traff_model0 Network
     Enzyme Molecule /
    Enzyme Activity
    Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    1actCaMKII-PSD  /
    CaMKII[8]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • CaMKII
    Pathway No. : 235
    90.00060.54explicit E-S complexSubstrate
    A845*_B831*845*

    Product
  • A835*845*_
    B835*845*

  • 2CaM_Ca_n-CaNAB  /
    PP2B[27]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A845*_B831*845*

    Product
    A_B831*845*
    3CaM_Ca_n-CaNAB  /
    PP2B[31]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A845*_B831*845*

    Product
    A845*_B831*
    4CaM_Ca_n-CaNAB  /
    PP2B[8]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A845*_B831*845*

    Product
    A_B831*845*
    5CaM_Ca_n-CaNAB  /
    PP2B[9]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP2B
    Pathway No. : 238
    4.9706124explicit E-S complexSubstrate
    A845*_B831*845*

    Product
    A845*_B831*
    6PP1-active_PSD  /
    PP1[12]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    0.9714510.174explicit E-S complexSubstrate
    A845*_B831*845*

    Product
    A_B831*845*
    7PP1-active_PSD  /
    PP1[13]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    0.9714510.174explicit E-S complexSubstrate
    A845*_B831*845*

    Product
    A845*_B831*
    8PP1-active_PSD  /
    PP1[21]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    2.000050.354explicit E-S complexSubstrate
    A845*_B831*845*

    Product
    A845*_B845*

    A845*_B831*845* acting as a Product of an Enzyme in  
    AMPAR_traff_model0 Network
     Enzyme Molecule /
    Enzyme Activity
    Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    1actCaMKII-PSD  /
    CaMKII[4]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • CaMKII
    Pathway No. : 235
    90.00060.54explicit E-S complexSubstrate
    A845*_B845*

    Product
    A845*_B831*845*
    2PKA-active  /
    PKA[26]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A_B831*845*

    Product
    A845*_B831*845*
    3PKA-active  /
    PKA[30]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A845*_B831*

    Product
    A845*_B831*845*
    4PKA-active  /
    PKA[8]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A_B831*845*

    Product
    A845*_B831*845*
    5PKA-active  /
    PKA[9]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PKA
    Pathway No. : 240
    7.5002164explicit E-S complexSubstrate
    A845*_B831*

    Product
    A845*_B831*845*
    6PP1-active_PSD  /
    PP1[24]
  • AMPAR_traff_
    model0

    Accession No. : 59
  • PP1_PSD
    Pathway No. : 239
    2.000050.354explicit E-S complexSubstrate
  • A835*845*_
    B835*845*


    Product
    A845*_B831*845*

  • A845*_B831*845* acting as a Substrate in a reaction in  
    AMPAR_traff_model0 Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    exo_reg_*
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    0.0002
    (#^-1 s^-1)
    0.008
    (s^-1)
    Not applicable**-Substrate
    A845*_B831*845*
    Anchor

    Product
    A845*_B831*845*
    ** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration

    A845*_B831*845* acting as a Product in a reaction in  
    AMPAR_traff_model0 Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    exo_reg_*
  • AMPAR_traff_
    model0

    Accession No. : 59
  • AMPAR
    Pathway No. : 242
    0.0002
    (#^-1 s^-1)
    0.008
    (s^-1)
    Not applicable**-Substrate
    A845*_B831*845*
    Anchor

    Product
    A845*_B831*845*
    ** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration



    Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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