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Molecule Parameter List for CaMKII-thr286-PSD

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
CaMKII-thr286-PSD participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences1203110

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
  • AMPAR_traff_
    model1
  • 60Network
    Shared_Object_AMPAR_traff_model1 CaMKII CaM 
    PP1 PP2B PP1_PSD 
    PKA AC AMPAR 
    AMPAR_memb 
    This is the basic model of AMPAR trafficking bistability. It is based on Hayer and Bhalla, PLoS Comput. Biol. 2005. It includes the degradation and turnover of AMPARs. The CaMKII portion of the model is not bistable.

    CaMKII-thr286-PSD acting as a Molecule in  
    AMPAR_traff_model1 Network
    NameAccession NamePathway NameInitial Conc.
    (uM)
    Volume
    (fL)
    Buffered
    CaMKII-thr286-PSD
  • AMPAR_traff_
    model1

    Accession No. : 60
  • CaMKII
    Pathway No. : 245
    00.01No

    CaMKII-thr286-PSD acting as a Summed Molecule in  
    AMPAR_traff_model1 Network
     Accession NanePathway NameTargetInput
    1
  • AMPAR_traff_
    model1

    Accession No. : 60
  • CaMKII
    Pathway No. : 245
    tot-auto-PSD
  • CaMKII-thr286-PS
    D

    CaMKII***-PSD
  • basal_CaMKII_
    PSD

  • 2
  • AMPAR_traff_
    model1

    Accession No. : 60
  • CaMKII
    Pathway No. : 245
    286P-PSD
  • CaMKII-thr286-Ca
    M-PSD

  • CaMKII-thr286-PS
    D


  • CaMKII-thr286-PSD acting as a Substrate for an Enzyme in  
    AMPAR_traff_model1 Network
     Enzyme Molecule /
    Enzyme Activity
    Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    1tot-auto-PSD  /
    auton-305-PSD
  • AMPAR_traff_
    model1

    Accession No. : 60
  • CaMKII
    Pathway No. : 245
    12564explicit E-S complexSubstrate
  • CaMKII-thr286-PS
    D


    Product
    CaMKII***-PSD
  • 2
  • tot-CaM-CaMKII-P
    SD
      /
    CaM-act-305-PSD
  • AMPAR_traff_
    model1

    Accession No. : 60
  • CaMKII
    Pathway No. : 245
    81.170164explicit E-S complexSubstrate
  • CaMKII-thr286-PS
    D


    Product
    CaMKII***-PSD
  • 3PP1-active_PSD  /
    Deph-thr286b
  • AMPAR_traff_
    model1

    Accession No. : 60
  • PP1_PSD
    Pathway No. : 249
    1.999942.54explicit E-S complexSubstrate
  • CaMKII-thr286-PS
    D


    Product
    CaMKII-PSD

  • CaMKII-thr286-PSD acting as a Product of an Enzyme in  
    AMPAR_traff_model1 Network
    Enzyme Molecule /
    Enzyme Activity
    Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    PP1-active_PSD  /
    Deph-thr305
  • AMPAR_traff_
    model1

    Accession No. : 60
  • PP1_PSD
    Pathway No. : 249
    5.099092.54explicit E-S complexSubstrate
    CaMKII***-PSD

    Product
  • CaMKII-thr286-PS
    D


  • CaMKII-thr286-PSD acting as a Substrate in a reaction in  
    AMPAR_traff_model1 Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
  • CaMKII-thr286-bi
    nd-CaM-PSD
  • AMPAR_traff_
    model1

    Accession No. : 60
  • CaMKII
    Pathway No. : 245
    1000.02
    (uM^-1 s^-1)
    0.1
    (s^-1)
    Kd(bf) = 0.0001(uM)-Substrate
    CaM-Ca4-PSD
  • CaMKII-thr286-PS
    D


    Product
  • CaMKII-thr286-Ca
    M-PSD

  • Same values as for the main compartment Can the main compartment pool of Ca/CaM be used?



    Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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