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Accession Type:
Network
Ajay_Bhalla_
2007_ReacDiff1_
1e-13
Shared_Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13
PKC
MAPK
Ras
CaM
PKM
chain
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[1]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[2]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[3]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[4]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[5]
PKC
MAPK
Ras
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[6]
CaM
PKM
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[7]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[8]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[9]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[10]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[11]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[12]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[13]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[14]
 Molecule
 Enzyme
 Reaction
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[15]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[16]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[17]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[18]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[19]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[20]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[21]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[22]
PKC
MAPK
Ras
CaM
PKM
Shared Object_
Ajay_Bhalla_
2007_ReacDiff1_
1e-13_[23]
PKC
MAPK
Ras
CaM
PKM

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Parameters for Shared Object_Ajay_Bhalla_2007_ReacDiff1_1e-13_[14] (Pathway Number 617)

Pathway Layout

Pathway Basic Parameters

Pathway NameShared Object_Ajay_Bhalla_2007_ReacDiff1_1e-13_[14]
Pathway Entry Number 617
Accession Number 82
Accession Name Ajay_Bhalla_2007_ReacDiff1_1e-13
Species Rat
Tissue Hippocampal CA1
CellCompartmentDendrite
Related Pathways 466, 768, 1009
Notes  This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.

Statistics

7
10
3

Conversion format

This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile


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Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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