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Pathway List for pkc

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Entries are color tagged depending on Network  or Pathway 
#134#134#134#134#134#134#134#134#134#134#134#134#134#134#134#134#134#134#134#134
  Pathway Name
Pathway No.
Accession Name
Accession No.
Accession
Type
Pathway statisticspkc statisticsSource
Entry Date
21 PKC
Pathway No. 467
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461473479485491497503509515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
22 PKC
Pathway No. 473
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467479485491497503509515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
23 PKC
Pathway No. 479
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473485491497503509515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
24 PKC
Pathway No. 485
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479491497503509515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
25 PKC
Pathway No. 491
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485497503509515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
26 PKC
Pathway No. 497
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491503509515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
27 PKC
Pathway No. 503
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497509515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
28 PKC
Pathway No. 509
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503515521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
29 PKC
Pathway No. 515
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509521527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
30 PKC
Pathway No. 521
 Ajay_bhalla_
2007_ReacDiff1_
1e-12

Accession No. 81
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515527534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
   
This pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway.
FormatFile
31 PKC
Pathway No. 527
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521534540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
32 PKC
Pathway No. 534
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527540546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
33 PKC
Pathway No. 540
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534546552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
34 PKC
Pathway No. 546
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534540552558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
35 PKC
Pathway No. 552
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534540546558
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
36 PKC
Pathway No. 558
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534540546552
564570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
37 PKC
Pathway No. 564
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534540546552
558570576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
38 PKC
Pathway No. 570
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534540546552
558564576582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
39 PKC
Pathway No. 576
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534540546552
558564570582588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile
40 PKC
Pathway No. 582
 Ajay_Bhalla_
2007_ReacDiff1_
1e-13

Accession No. 82
NetworkMolecule = 7
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87/
2006-12-08 00:00:00
   Related Pathway: 
22034556071108123138147161181200207313330348364370376383389395401408
414420426431437443449455461467473479485491497503509515521527534540546552
558564570576588594600606612618624630636642648654660666672678685691698703
709715721727733739745751757763769775781787793799805811817823829835841847
853859865871877883889895901907913919927932938944950956963969974981987993
99910041010101610221028103410401046105210581064
    This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
   
This pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway.
FormatFile

 
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Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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