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Pathway List for pp2b
Result: 1 - 14 of 14 rows are displayed
Default ordering is done according to Pathway Name.Table header can be used for changing the default ordering.
indicates that ordering is done according to ascending or descending order.
Entries are color tagged depending on Network  or Pathway 
  Pathway Name
Pathway No.		Accession Name
Accession No.		Accession
Type		Pathway statisticspp2b statisticsSource
Entry Date
1 PP2B
Pathway No. 16		 fig3_CaMKII

Accession No. 2		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication )/
2001-11-07 00:00:00
   Related Pathway: 
29, 83, 205, 219, 238, 248, 261, 267, 276, 285, 325, 342, 360
    This is the model file for figure 3 from Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. It is a model of the Ca activation of CaMKII and other CaM-activated enzymes. It includes the regulatory phosphatases PP1 and PP2B (Calcineurin) acting on CaMKII and also includes CaM-activated adenylyl cyclase and PKA in the synapse.
Demonstration script files for generating the figures in the paper, including figure 3, are available here.
   
This pathway is part of accession 2 and is completely specified in the file acc2.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc2.g   
GENESIS Format (Annotated version)    Anno_acc2.g   
2 PP2B
Pathway No. 29		 fig4_synapse

Accession No. 3		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication )/
2001-11-07 00:00:00
   Related Pathway: 
16, 83, 205, 219, 238, 248, 261, 267, 276, 285, 325, 342, 360
    This is the composite model of 4 kinases: PKC, MAPK, PKA and CaMKII and numerous regulatory pathways involved in synaptic signaling. From Bhalla US and Iyengar R. Science (1999) 283(5400):381-7.This model comes from figure 4 of that paper.
Demonstration script files for generating the figures in the paper, including figure 4, are available here.
   
This pathway is part of accession 3 and is completely specified in the file acc3.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc3.g   
GENESIS Format (Annotated version)    Anno_acc3.g   
3 PP2B
Pathway No. 83		 Synaptic_
Network
Accession No. 16		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication )/
2001-12-12 00:00:00
   Related Pathway: 
16, 29, 205, 219, 238, 248, 261, 267, 276, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 16 and is completely specified in the file acc16.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc16.g   
GENESIS Format (Annotated version)    Anno_acc16.g   
4 PP2B
Pathway No. 205		 CaMKII_2003

Accession No. 49		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US. Biophys J. 2004 Aug;87(2):733-44. ( peer-reviewed publication )./
2003-04-28 00:00:00
   Related Pathway: 
16, 29, 83, 219, 238, 248, 261, 267, 276, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 49 and is completely specified in the file acc49.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc49.g   
GENESIS Format (Annotated version)    Anno_acc49.g   
MATLAB format    acc49.m   
SBML format    acc49.xml   
5 PP2B
Pathway No. 219		 MAPK_network_
2003
Accession No. 50		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US Biophys J. 2004 Aug;87(2):745-53. ( peer-reviewed publication )/
2003-04-28 00:00:00
   Related Pathway: 
16, 29, 83, 205, 238, 248, 261, 267, 276, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 50 and is completely specified in the file acc50.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc50.g   
GENESIS Format (Annotated version)    Anno_acc50.g   
MATLAB format    acc50.m   
SBML format    acc50.xml   
6 PP2B
Pathway No. 238		 AMPAR_traff_
model0
Accession No. 59		NetworkMolecule = 4
Enzyme   = 40
Reaction  = 3
Molecule = 0
Enzyme   = 1
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 248, 261, 267, 276, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 59 and is completely specified in the file acc59.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc59.g   
MATLAB format    acc59.m   
SBML format    acc59.xml   
7 PP2B
Pathway No. 248		 AMPAR_traff_
model1
Accession No. 60		NetworkMolecule = 4
Enzyme   = 40
Reaction  = 3
Molecule = 0
Enzyme   = 1
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 261, 267, 276, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 60 and is completely specified in the file acc60.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc60.g   
MATLAB format    acc60.m   
SBML format    acc60.xml   
8 PP2B
Pathway No. 261		 CaMKII_noPKA_
model3
Accession No. 62		NetworkMolecule = 2
Enzyme   = 0
Reaction  = 3
Molecule = 0
Enzyme   = 0
Reaction  = 0
Hayer A, Bhalla US PLoS PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 248, 267, 276, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 62 and is completely specified in the file acc62.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc62.g   
MATLAB format    acc62.m   
SBML format    acc62.xml   
9 PP2B
Pathway No. 267		 CaMKII_model3

Accession No. 63		NetworkMolecule = 2
Enzyme   = 0
Reaction  = 3
Molecule = 0
Enzyme   = 0
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 248, 261, 276, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 63 and is completely specified in the file acc63.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc63.g   
MATLAB format    acc63.m   
SBML format    acc63.xml   
10 PP2B
Pathway No. 276		 AMPAR_CaMKII_
strong_coupling
Accession No. 64		NetworkMolecule = 2
Enzyme   = 0
Reaction  = 3
Molecule = 0
Enzyme   = 0
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 248, 261, 267, 285, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 64 and is completely specified in the file acc64.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc64.g   
MATLAB format    acc64.m   
SBML format    acc64.xml   
11 PP2B
Pathway No. 285		 AMPAR_CaMKII_
weak_coupling
Accession No. 65		NetworkMolecule = 4
Enzyme   = 40
Reaction  = 3
Molecule = 0
Enzyme   = 1
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-21 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 248, 261, 267, 276, 325, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 65 and is completely specified in the file acc65.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc65.g   
MATLAB format    acc65.m   
SBML format    acc65.xml   
12 PP2B
Pathway No. 325		 Ajay_Bhalla_
2004_PKM_Tuning
Accession No. 76		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication )/
2006-12-12 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 248, 261, 267, 276, 285, 342, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 76 and is completely specified in the file acc76.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc76.g   
MATLAB format    acc76.m   
SBML format    acc76.xml   
13 PP2B
Pathway No. 342		 Ajay_Bhalla_
2004_PKM_MKP3_
Tuning
Accession No. 77		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80 ( Peer-reviewed publication )/
2006-12-12 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 248, 261, 267, 276, 285, 325, 360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 77 and is completely specified in the file acc77.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc77.g   
MATLAB format    acc77.m   
SBML format    acc77.xml   
14 PP2B
Pathway No. 360		 Ajay_Bhalla_
2004_Feedback_
Tuning
Accession No. 78		NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication )/
2006-12-12 00:00:00
   Related Pathway: 
16, 29, 83, 205, 219, 238, 248, 261, 267, 276, 285, 325, 342
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 78 and is completely specified in the file acc78.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc78.g   
MATLAB format    acc78.m   
SBML format    acc78.xml