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Molecule Parameter List for EPi | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by  color. | | Statistics |
Accession and Pathway Details | |
EPi acting as a Molecule in SERCA Network
| Name | Accession Name | Pathway Name | Initial Conc.
(uM) | Volume
(fL) | Buffered | | EPi | SERCA
Accession No. : 37 | SERCA
Pathway No. : 187 | 0 | 0.0016667 | No | | Phosphoenzyme decompostion intermeditate state. |
EPi acting as a Substrate in a reaction in SERCA Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | reac8 | SERCA
Accession No. : 37 | SERCA
Pathway No. : 187 | 0.4
(s^-1) | 0
(uM^-1 s^-1) | - | - | Substrate
EPi
Product
E2
pi
| kf and kb were taken from the literature source
Mahaney et al. (2000 Mar) Biophys J. 78(3) 1306-23.
some minor adjustments for step7 and step8 were required to produce a precise simulation of the EP formation and Pi liberation time course as claimed by the author of above literature. |
EPi acting as a Product in a reaction in SERCA Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | reac7 | SERCA
Accession No. : 37 | SERCA
Pathway No. : 187 | 0.3
(s^-1) | 0.7
(s^-1) | Keq = 2.3333(uM) | 1sec | Substrate
EP
Product
EPi
| kf and kb were taken from the literature source
Mahaney et al. (2000 Mar) Biophys J. 78(3) 1306-23.
Some minor adjustments for steps 7 and 8 were required to prduce a precise simulation of the EP formation and Pi liberation time course |
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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