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Accession List

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Accession
No.
NameSource /
Entry Date
Species /
Tissue
Cell CompartmentMethodology /
Model Implementation
1fig2_egfrBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
 2001-11-07
Generic mammalian /
Brain
Surface - NucleusQuantitative match to experiments, Hypothetical /
Exact GENESIS implementation
2fig3_CaMKIIBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
 2001-11-07
Generic mammalian /
Neuronal
SynapseQuantitative match to experiments, Qualitative /
Exact GENESIS implementation
3fig4_synapseBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
 2001-11-07
Generic mammalian /
Neuronal
SynapseQuantitative match to experiments, Qualitative, Hypothetical /
Exact GENESIS implementation
4
  • mkp1_feedback_
    effects
  • Bhalla US et al. Science (2002) 297(5583):1018-23. ( peer-reviewed publication ) /
     2001-11-07
    Generic mammalian /
    NIH 3T3 Expression
    Surface - nucleusQuantitative match to experiments /
    Exact GENESIS implementation
    83d_fold_modelBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
     2001-11-08
    Generic mammalian /
    NIH 3T3 Expression
    Surface - NucleusQuantitative match to experiments /
    Exact GENESIS implementation
    9
  • MAPK_MKP1_
    oscillation
  • Bhalla US, Iyengar R. Chaos (2001) 11(1):221-226. ( peer-reviewed publication ) /
     2001-11-08
    Generic mammalian /
    NIH 3T3 Expression
    Surface - NucleusQualitative /
    Exact GENESIS implementation
    11NOS_IwanagaIn-house. /
     2001-11-12
    Rat; Mammalian /
    Neuronal; Expression in E.coli
    CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    12Stuehr_NOS Santolini J. et al. J Biol Chem. (2001) 276(2):1233-43. ( peer-reviewed publication ) /
     2001-11-12
    Generic mammalian /
    Neuronal ; Expressioned in E.coli
    CytosolQuantitative match to experiments /
    Approximate implementation
    13PLCbeta1In-house  /
     2001-11-12
    Bovine; Mammalian /
    Brain - Neuronal; expressed in E.coli
    Cell MembraneQualitative /
    Exact GENESIS implementation
    15
  • sGC_Stone_
    Marletta
  • Stone JR, Marletta MA. Biochemistry (1996) 35(4):1093-9. ( peer-reviewed publication ) /
     2001-12-12
    Bovine /
    Lungs
    CytosolQuantitative match to experiments /
    Mathematically equivalent
    16
  • Synaptic_
    Network
  • Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
     2001-12-12
    Generic mammalian /
    Neuronal
    SynapseQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    18Kuroda_GCKuroda S. et al. J Neurosci. (2001) 21(15):5693-702. ( peer-reviewed publication ) /
     2001-12-24
    Generic mammalian /
    Neuronal
    SynapseQuantitative match to experiments /
    Exact GENESIS implementation
    19CondorelliGCCondorelli P, George SC. Biophys J. (2001) 80(5):2110-9). ( peer-reviewed publication  /
     2001-12-25
    Generic mammalian /
    Pulmonary and vascular smooth muscle
    CytosolQuantitative match to experiments /
    Mathematically equivalent
    20
  • NOS_Phosph_
    regulation
  • In-house /
     2001-12-25
    rat; Mammalian /
    Brain - Neuronal; expressed in E.coli
    CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    23
  • NonOsc_Ca_
    IP3metabolism
  • Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
     2002-01-07
    Generic mammalian /
    Brain - Neuronal
    CytosolQuantitative match to experiments, Qualitative /
    Approximate implementation
    24
  • Osc_Ca_
    IP3metabolism
  • Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
     2002-01-08
    Generic mammalian /
    Brain - Neuronal
    CytosolQuantitative match to experiments, Qualitative /
    Approximate implementation
    25cAMP_pathwayBhalla US Methods Enzymol. 2002;345:3-23). ( peer-reviewed publication ) /
     2002-01-12
    Generic mammalian /
    Brain - Neuronal
    Cell membrane + CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    26PKC_turnoverIn-house  /
     2002-01-22
    Generic mammalian /
    Brain - Neuronal
    Cell membrane +CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    27MAPK_oscBoris N. Kholodenko Eur J Biochem. (2000) 267(6):1583-8). ( peer-reviewed publication ) /
     2002-01-22
    Xenopus /
    Oocyte extract
    CytosolHypothetical /
    Mathematically equivalent
    28
  • CO_activation_
    of_GC
  • In-house  /
     2002-01-22
    Bovine /
    Lungs
    CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    29Kierzek_LacZKierzek AM. et al. J Biol Chem. (2001) 276(11):8165-72. ( peer-reviewed publication ) /
     2002-01-28
    E. Coli /
    -
    InternalQualitative /
    Approximate implementation
    30
  • Huang_Ferrell_
    MAPK
  • Huang CY and Ferrell JE Jr. Proc Natl Acad Sci U S A. (1996) 93(19):10078-83 ( peer-reviewed publication ) /
     2002-01-31
    Xenopus /
    Oocytes extract
    CytosolQuantitative match to experiments /
    Approximate implementation
    31
  • NonOsc_Ca_
    IP3metabolism
  • Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
     2002-04-03
    Generic mammalian /
    Brain - Neuronal
    CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    32
  • Osc_Ca_
    IP3metabolism
  • Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
     2002-04-03
    Generic mammalian /
    Brain - Neuronal
    CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    33CaMKIIWilliam R. Holmes J Comput Neurosci. (2000) 8(1):65-85 ( peer-reviewed publication ) /
     2002-08-21
    Generic mammalian /
    Brain - Neuronal
    SynapseQualitative /
    Approximate implementation
    34cGMP_regulationIn-house  /
     2002-08-27
    Bovine and Sprague-Dawley rats; mammalian /
    Pulmonary, cardiac and expressed in Baculovirus infected Sf21(Spodoptera frugiperda) insect cells
    CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    35
  • MAPK-bistability
    -fig1c
  • Bhalla US et al. Science (2002) 297(5583):1018-23 ( peer-reviewed publication ). /
     2002-11-07
    Generic mammalian /
    NIH 3T3 Expression
    Surface - NucleusQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    36luciferaseL. Yu. Brovko et al 1994, Biochemistry (Moscow) 59(2):195-201, 1994 ( peer-reviewed publication ). /
     2002-12-12
    E. Coli /
    -
    CytosolQualitative /
    Approximate implementation
    37SERCA Mahaney JE. et al. Biophys J. (2000) 78(3) 1306-23. ( peer-reviewed publication ) /
     2002-12-31
    Canine /
    Cardiac; expressed in Baculovirus infected Sf21(Spodoptera frugiperda) insect cells.
    MicrosomesQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    42
  • CDK2-CyclinA_
    activation_
    pathway
  • Morris MC. et al. J Biol Chem. (2002) 277(26):23847-53. ( peer-reviewed publication ) /
     2003-01-11
    Human, Xenopus /
    Expressed in E.coli
    CytosolQualitative /
    Exact GENESIS implementation
    43
  • CDK2-CyclinA_
    activation_
    improved
  • Morris MC. et al. J Biol Chem. (2002) 277(26):23847-53. ( peer-reviewed publication ) /
     2003-01-11
    Human, Xenopus /
    Expressed in E.coli
    CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    44
  • MAPK_Asthagiri_
    no_fb
  • Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
     2003-02-22
    Chinese hamster (Cricetulus griseus); mammalian /
    Ovary - CHO cell line
    Surface, cytosolQuantitative match to experiments, Qualitative /
    Mathematically equivalent
    45
  • MAPK_Asthagiri_
    adapt_fb
  • Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
     2003-02-22
    Chinese hamster (Cricetulus griseus); mammalian /
    Ovary - CHO cell line
    Surface, cytosolQuantitative match to experiments, Qualitative /
    Mathematically equivalent
    46
  • MAPK_Asthagiri_
    enz_fb
  • Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
     2003-02-22
    Chinese hamster (Cricetulus griseus); mammalian /
    Ovary - CHO cell line
    Surface + cytosolQualitative /
    Approximate implementation
    47PKA_2003Bhalla US. (2004) Biophys J. 87(2):733-44. ( peer-reviewed publication ) /
     2003-04-28
    Generic mammalian /
    Generic
    Cytosol + Cell membraneQualitative /
    Exact GENESIS implementation
    48PKC_2003Bhalla US. (2004) Biophys J. 87(2):733-44 .( peer-reviewed publication ) /
     2003-04-28
    Generic mammalian /
    Generic
    Cytosol + Cell membraneQualitative /
    Exact GENESIS implementation
    49CaMKII_2003Bhalla US. Biophys J. 2004 Aug;87(2):733-44. ( peer-reviewed publication ). /
     2003-04-28
    Generic mammalian /
    Brain - Neuronal
    SynapseQualitative /
    Exact GENESIS implementation
    50
  • MAPK_network_
    2003
  • Bhalla US Biophys J. 2004 Aug;87(2):745-53. ( peer-reviewed publication ) /
     2003-04-28
    Generic mammalian /
    Brain - Neuronal
    SynapseQualitative /
    Exact GENESIS implementation
    52
  • EGFR_Signaling_
    pathway
  • Quantification of Short Term Signaling by the EGFR Kholodenko et al, The J Biol Chem. , Vol 274, No. 42, Issue of October 15, pp. 30169 - 30181, 1999. ( peer-reviewed publication ) /
     2003-05-17
    Harlan Sprague Dawley rat; mammalian /
    Hepatocytes
    Cell membrane + cytosolQualitative /
    Mathematically equivalent
    55ChemotaxisBray et al. Mol.Biol.Cell (1993) 4(5): 469-482. ( peer-reviewed publication ) /
     2003-06-10
    E. Coli /
    -
    Cell membrane + cytosolQuantitative match to experiments /
    Mathematically equivalent

     
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