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Molecule Parameter List for MYp | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by  color. | | Statistics |
Accession and Pathway Details | |
| Accession Name | Accession No. | Accession Type | Pathway Link | | Chemotaxis | 55 | Pathway |
Chemotaxis | | All parameters used are from the .BCT files for BCT1.1 provided by Matthew Levin from the Computational Biology Group in the Department of Zoology at the University of Cambridge.Bias does not reach 0.7, there is a lag in the response of bias to the 5 sec 1 uM Aspartate pulse as shown by Bray et al. Mol.Biol.Cell (1993) 4(5): 469-482. The June 2003 version of the BCT program is BCT4.3 and is available at the computational biology site of the Zoology department at Cambridge University. |
MYp acting as a Molecule in Chemotaxis Network
| Name | Accession Name | Pathway Name | Initial Conc.
(uM) | Volume
(fL) | Buffered | | MYp | Chemotaxis
Accession No. : 55 | Chemotaxis
Pathway No. : 226 | 0.001 | 1.41 | No | | MYp = 9.53*e-10 M = 9.53*e-4 uM As per Signal 24 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
MYp acting as a Summed Molecule in Chemotaxis Network
| | Accession Nane | Pathway Name | Target | Input | | 1 | Chemotaxis
Accession No. : 55 | Chemotaxis
Pathway No. : 226 | Denominator | MYpYp
MYpYpYp
MYpYpYpYp
MYp
Motor
| | | Denominator value to calculate bias as stated on pp.471
Bias = [M + MYp]/[M + MYp + MYpYp + MYpYpYp + MYpYpYpYp]
Bray et al 1993, Mol.Biol.Cell 4: 469-482 | | 2 | Chemotaxis
Accession No. : 55 | Chemotaxis
Pathway No. : 226 | Numerator | MYp
Motor
| | | Numerator value to calculate bias as stated on pp.471 Bias = [M + MYp]/[M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
MYp acting as a Substrate in a reaction in Chemotaxis Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | Complexing[4] | Chemotaxis
Accession No. : 55 | Chemotaxis
Pathway No. : 226 | 285
(uM^-1 s^-1) | 6.64
(s^-1) | Kd(bf) = 0.0233(uM) | - | Substrate
CheYp
MYp
Product
MYpYp
| | CheYp complexes with MYp Kf = 2.85/Set_Yp = 2.85/1e-08 /sec/M = 2.85e+2/sec/uM Kb = 6.64 /sec As per EXEC.C provided by Matthew Levin Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
MYp acting as a Product in a reaction in Chemotaxis Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | Complexing[3] | Chemotaxis
Accession No. : 55 | Chemotaxis
Pathway No. : 226 | 88.0009
(uM^-1 s^-1) | 5.5
(s^-1) | Kd(bf) = 0.0625(uM) | - | Substrate
CheYp
Motor
Product
MYp
| | CheYp complexes with Flagellar Motor (M) Kf = 0.88/Set_Yp = 0.88/1e-08 /sec/M = 0.88e+2/sec/uM Kb = 5.5 /sec As per EXEC.C provided by Matthew Levin Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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