Enter a Search String

Special character and space not allowed in the query term. Search string should be at least 2 characters long.
Search in: Search for Match By

Molecule Parameter List for Degraded_lac_mRNA

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
Degraded_lac_mRNA participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences1000001

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
Repressilator68Network
Lambda-cl_gene,  Lac_gene,  TetR_gene 
This is a network model termed as Repressilator in which LacI inhibit transcription of tetR which in turn inhibit transcription of Lambda phage. This model simulates the result as per the Fig 1c of the paper : Elowitz MB, Leibler S., Nature. 2000 Jan 20;403(6767):335-8.

Degraded_lac_mRNA acting as a Molecule in  Repressilator Network
NameAccession NamePathway NameInitial Conc.
(uM)		Volume
(fL)		Buffered
Degraded_lac_mRNARepressilator
Accession No. : 68		Lac_gene
Pathway No. : 296		03Yes
Degradation product of lac m-RNA

Degraded_lac_mRNA acting as a Product in a reaction in  Repressilator Network
Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
NameAccession NamePathway NameKfKbKdtauReagents
  • lac_mRNA_
    degradation
    		• Repressilator
    Accession No. : 68    		Lac_gene
    Pathway No. : 296    		0.0058
    (s^-1)    		0
    (s^-1)    		--Substrate
    lac_mRNA

    Product
  • Degraded_lac_
    mRNA
    • This reaction denotes the degradation of the lac m-RNA, the half life of which is two minutes. t1/2 = 0.693/k where k denotes kf Elowitz, M. et al. (2000) Nature 403:335-338