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Molecule Parameter List for peptide

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by

color.

Statistics

*peptide* participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	1	0	0	0	3	1	0

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
Protein_ synthesis	91	Network	Shared_Object_Protein_synthesis, 43S_complex
40S, the eIF4F-mRNA complex, and eEF2 bind to form the translation complex, leading to protein synthesis.

peptide acting as a Molecule in Protein_synthesis Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
peptide	Protein_ synthesis Accession No. : 91	Shared_Object_ Protein_ synthesis Pathway No. : 1095	0	1000	No

peptide acting as a Product of an Enzyme in Protein_synthesis Network

	Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
1	Translation_clx / pro_syn	Protein_ synthesis Accession No. : 91	Shared_Object_ Protein_ synthesis Pathway No. : 1095	0.0549982	0.02	4	explicit E-S complex	Substrate AA Product peptide
2	Basal_ Translation / basal_syn	Protein_ synthesis Accession No. : 91	Shared_Object_ Protein_ synthesis Pathway No. : 1095	0.0550001	0.02	4	explicit E-S complex	Substrate AA Product peptide
3	Basal_ Translation / rad_basal_syn	Protein_ synthesis Accession No. : 91	Shared_Object_ Protein_ synthesis Pathway No. : 1095	0.0550001	0.02	4	explicit E-S complex	Substrate rad_AA Product peptide

peptide acting as a Substrate in a reaction in Protein_synthesis Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
pep_elongation	Protein_ synthesis Accession No. : 91	Shared_Object_ Protein_ synthesis Pathway No. : 1095	0.1 (s^-1)	0.001 (s^-1)	Keq = 0.01(uM)	9.901sec	Substrate peptide Product protein

Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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