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Molecule Parameter List for Nucleotides

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
Nucleotides participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences1002000

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
mRNA synthesis94Network
kinetics compartment_1 compartment_2 
The model consists of three major pathways: Calcium-calmodulin dependent protein kinase IV (CaMKIV), Mitogen-activated protein kinase (MAPK) and Protein Phosphatase 1 (PP1). Each of these converged on CREB activation. We also modeled further interactions with Transducer of regulated CREB activity 1 (TORC1) and the protein kinase A (PKA) pathway.

Nucleotides acting as a Molecule in  
mRNA synthesis Network
NameAccession NamePathway NameInitial Conc.
(uM)
Volume
(fL)
Buffered
NucleotidesmRNA synthesis
Accession No. : 94
compartment_1
Pathway No. : 1113
0.2370Yes

Nucleotides acting as a Substrate for an Enzyme in  
mRNA synthesis Network
 Enzyme Molecule /
Enzyme Activity
Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
1
  • Basal_
    transcription
      /
  • basal_mRNA_
    synthesis
  • mRNA synthesis
    Accession No. : 94
    compartment_1
    Pathway No. : 1113
    1.08120.054explicit E-S complexSubstrate
    Nucleotides

    Product
    mRNA_clx
       
    2
  • Transcription_
    clx
      /
    mRNA_syn
  • mRNA synthesis
    Accession No. : 94
    compartment_1
    Pathway No. : 1113
    1.080.054explicit E-S complexSubstrate
    Nucleotides

    Product
    mRNA_clx
       



    Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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