NCBS Home page
Accession List
Pathway List
Search
Authorized Users
Help
News archives

Enter a Search String

Special character and space not allowed in the query term. Search string should be at least 2 characters long.
Search in: Search for Match By

Molecule Parameter List for B_star

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
B_star participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences1001210

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
  • Differential syn
    thesis of mRNA
    		• 95Network
    kinetics,  compartment_1,  compartment_2 
    The model consists of three major pathways: Calcium-calmodulin dependent protein kinase IV (CaMKIV), Mitogen-activated protein kinase (MAPK) and Protein Phosphatase 1 (PP1). Each of these converged on CREB activation. We also modeled further interactions with Transducer of regulated CREB activity 1 (TORC1) and the protein kinase A (PKA) pathway.

    B_star acting as a Molecule in      Differential synthesis of mRNA Network
    NameAccession NamePathway NameInitial Conc.
    (uM)    		Volume
    (fL)    		Buffered
    B_star
  • Differential syn
    thesis of mRNA
    Accession No. : 95
    		• compartment_1
    Pathway No. : 1116    		0370No

    B_star acting as a Substrate for an Enzyme in      Differential synthesis of mRNA Network
    Enzyme Molecule /
    Enzyme Activity    		Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    B_phosphatase  /
    dephosph_B
  • Differential syn
    thesis of mRNA
    Accession No. : 95
    		• compartment_1
    Pathway No. : 1116    		10.14explicit E-S complexSubstrate
    B_star

    Product
    B

    B_star acting as a Product of an Enzyme in      Differential synthesis of mRNA Network
     Enzyme Molecule /
    Enzyme Activity    		Accession NamePathway NameKm (uM)kcat (s^-1)RatioEnzyme TypeReagents
    1active_RSK2_n  /
    RSK_phsoph_CREB
  • Differential syn
    thesis of mRNA
    Accession No. : 95
    		• compartment_1
    Pathway No. : 1116    		50.14explicit E-S complexSubstrate
    B

    Product
    B_star
       
    2pMSK1_n  /
  • MSK1_dash_
    phospho
  • Differential syn
    thesis of mRNA
    Accession No. : 95
    		• compartment_1
    Pathway No. : 1116    		20.14explicit E-S complexSubstrate
    B

    Product
    B_star
       

    B_star acting as a Substrate in a reaction in      Differential synthesis of mRNA Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    Bstar_bind_CREB
  • Differential syn
    thesis of mRNA
    Accession No. : 95
    		• compartment_1
    Pathway No. : 1116    		1
    (uM^-1 s^-1)    		0.1
    (s^-1)    		Kd(bf) = 0.1(uM)-Substrate
    B_star
    CREB

    Product
    MAPKstar_CREB


    Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
    This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details.