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Molecule Parameter List for AMPAR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by  color. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Statistics | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| AMPAR participated as | Molecule | Sum total of | Enzyme | Substrate of an enzyme | Product of an enzyme | Substrate in Reaction | Product in Reaction |
| No. of occurrences | 1 | 0 | 0 | 1 | 1 | 1 | 0 |
Accession and Pathway Details |
| Accession Name | Accession No. | Accession Type | Pathway Link |
| BCM | 96 | Pathway | bcm |
| Mass-action model for generating Bienenstock-Cooper-Munro (BCM) rule for synaptic plasticity | |||
AMPAR acting as a Molecule in BCM Network
| Name | Accession Name | Pathway Name | Initial Conc. (uM) | Volume (fL) | Buffered |
| AMPAR | BCM Accession No. : 96 | bcm Pathway No. : 1118 | 1.6 | 1.66667 | No |
AMPAR acting as a Substrate for an Enzyme in BCM Network
| Enzyme Molecule / Enzyme Activity | Accession Name | Pathway Name | Km (uM) | kcat (s^-1) | Ratio | Enzyme Type | Reagents |
| act_CaMKII / ph_AMPAR | BCM Accession No. : 96 | bcm Pathway No. : 1118 | 1.00369025 | 2 | 4 | explicit E-S complex | Substrate AMPAR Product p_AMPAR |
AMPAR acting as a Product of an Enzyme in BCM Network
| Enzyme Molecule / Enzyme Activity | Accession Name | Pathway Name | Km (uM) | kcat (s^-1) | Ratio | Enzyme Type | Reagents |
| Ca2_CaN / deph_AMPAR | BCM Accession No. : 96 | bcm Pathway No. : 1118 | 0.10036902500000001 | 10 | 4 | explicit E-S complex | Substrate p_AMPAR Product AMPAR |
AMPAR acting as a Substrate in a reaction in BCM Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents |
| baseline | BCM Accession No. : 96 | bcm Pathway No. : 1118 | 0.4 (s^-1) | 1.6 (s^-1) | Keq = 4(uM) | 0.5sec | Substrate AMPAR Product p_AMPAR |