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Molecule Parameter List for CaMCa

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by color.

Statistics

CaMCa participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	1	0	0	0	0	3	1

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
CaMKII	33	Network	Shared_Object_CaMKII,  CaM,  CaMKII,   CaN
This is a deterministic, point kinetics approximation to the dendritic spine CaMKII model described in William R. Holmes J Comput Neurosci. (2000) 8(1):65-85. Rates are the same but the responses differ somewhat because this model does not include the stochastic and diffusive calculations of the original.

CaMCa acting as a Molecule in  CaMKII Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
CaMCa	CaMKII Accession No. : 33	CaM Pathway No. : 173	0	0.1309	No

CaMCa acting as a Substrate in a reaction in  CaMKII Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

	Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
1	CaMKII-bind-CaMC a	CaMKII Accession No. : 33	CaMKII Pathway No. : 174	0.8 (uM^-1 s^-1)	2700 (s^-1)	Kd(bf) = 3375.0084(uM)	-	Substrate CaMCa CaMKII Product CAMKII-CaMCa
2	CaMCa-bind-Ca	CaMKII Accession No. : 33	CaM Pathway No. : 173	33.2998 (uM^-1 s^-1)	20 (s^-1)	Kd(bf) = 0.6006(uM)	-	Substrate Ca CaMCa Product CaMCa2
3	CaN-bind-CaMCa	CaMKII Accession No. : 33	CaN Pathway No. : 175	5 (uM^-1 s^-1)	3750 (s^-1)	Kd(bf) = 749.9955(uM)	-	Substrate CaMCa CaN Product CaN-CaMCa

CaMCa acting as a Product in a reaction in  CaMKII Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
CaM-bind-Ca	CaMKII Accession No. : 33	CaM Pathway No. : 173	1 (uM^-1 s^-1)	20 (s^-1)	Kd(bf) = 19.9992(uM)	-	Substrate Ca CaM Product CaMCa