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Molecule Parameter List for MYpYp | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by  color. | | Statistics |
Accession and Pathway Details | |
| Accession Name | Accession No. | Accession Type | Pathway Link | | Chemotaxis | 57 | Pathway |
Chemotaxis | Reactions feeding into TnWa, TaWA and TWA are scaled by 10 Binding reaction of Tar with Aspartate has been scaled by 10 Phosphotransfer from CheAp to CheY has Kb = 0.263/sec/uM instead of 0.2/sec/uM used in BCT1.1.
All remaining parameters are from the .BCT files for BCT1.1 provided by Matthew Levin from the Computational Biology Group in the Department of Zoology at the University of Cambridge.
The June 2003 version of the BCT program is BCT4.3 and is available at the computational biology site of the Zoology department at Cambridge University.
Citation: Bray et al. Mol.Biol.Cell (1993) 4(5): 469-482. |
MYpYp acting as a Molecule in Chemotaxis Network
| Name | Accession Name | Pathway Name | Initial Conc.
(uM) | Volume
(fL) | Buffered | | MYpYp | Chemotaxis
Accession No. : 57 | Chemotaxis
Pathway No. : 228 | 0.0004 | 1.41 | No | | MYpYp = 3.66e-10 M = 3.66e-4 uM As per Signal 25 in 1SIG_B.BCT provided by Matthew Levin MYpYp is responsible for pause in rotation of flagella Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
MYpYp acting as a Summed Molecule in Chemotaxis Network
| Accession Name | Pathway Name | Target | Input | Chemotaxis
Accession No. : 57 | Chemotaxis
Pathway No. : 228 | Denominator | MYpYp
MYpYpYp
MYpYpYpYp
MYp
Motor
| | Denominator value to calculate bias as stated on pp.471Bias = [ M + MYp ] / [M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
MYpYp acting as a Substrate in a reaction in Chemotaxis Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | Complexing[5] | Chemotaxis
Accession No. : 57 | Chemotaxis
Pathway No. : 228 | 6939.99
(uM^-1 s^-1) | 51
(s^-1) | Kd(bf) = 0.0073(uM) | - | Substrate
CheYp
MYpYp
Product
MYpYpYp
| | CheYp complexes with MYpYp Kf = 6.94/Set_Yp = 6.94/1e-08 /sec/M = 6.94e+2 /sec/uM Kb = 5.1 /sec As per EXEC.C provided by Matthew Levin Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
MYpYp acting as a Product in a reaction in Chemotaxis Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | Complexing[4] | Chemotaxis
Accession No. : 57 | Chemotaxis
Pathway No. : 228 | 2850
(uM^-1 s^-1) | 66.4
(s^-1) | Kd(bf) = 0.0233(uM) | - | Substrate
CheYp
MYp
Product
MYpYp
| | CheYp complexes with MYp Kf = 2.85/Set_Yp = 2.85/1e-08 /sec/M = 2.85e+2/sec/uM Kb = 6.64 /sec As per EXEC.C provided by Matthew Levin Bray et al 1993, Mol.Biol.Cell 4: 469-482 |
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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