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Molecule Parameter List for Bulk_AMPAR

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
Bulk_AMPAR participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences1000012

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
  • simple_AMPAR_
    traff_model2
    		• 61Network
    Shared_Object_simple_AMPAR_traff_model2,  Membrane,  Internal 
    This is a highly simplified model of the AMPAR trafficking cycle that exhibits bistability. It is model 2 from Hayer and Bhalla, PLoS 2005. Its main purpose it to illustrate how the bistability arises.

    Bulk_AMPAR acting as a Molecule in      simple_AMPAR_traff_model2 Network
    NameAccession NamePathway NameInitial Conc.
    (uM)    		Volume
    (fL)    		Buffered
    Bulk_AMPAR
  • simple_AMPAR_
    traff_model2
    Accession No. : 61
  • Shared_Object_
    simple_AMPAR_
    traff_model2
    Pathway No. : 254
    		• 0.0035Yes

    Bulk_AMPAR acting as a Substrate in a reaction in      simple_AMPAR_traff_model2 Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    exchange
  • simple_AMPAR_
    traff_model2
    Accession No. : 61
  • Shared_Object_
    simple_AMPAR_
    traff_model2
    Pathway No. : 254
    		• 0.018
    (s^-1)    		1
    (s^-1)    		Not applicable**-Substrate
    Bulk_AMPAR

    Product
    IR
    ** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration

    Bulk_AMPAR acting as a Product in a reaction in      simple_AMPAR_traff_model2 Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
     NameAccession NamePathway NameKfKbKdtauReagents
    1degradation[1]
  • simple_AMPAR_
    traff_model2
    Accession No. : 61
  • Shared_Object_
    simple_AMPAR_
    traff_model2
    Pathway No. : 254
    		• 0
    (s^-1)    		0
    (s^-1)    		Not applicable**-Substrate
    IR**

    Product
    Bulk_AMPAR
    2degradation
  • simple_AMPAR_
    traff_model2
    Accession No. : 61
  • Shared_Object_
    simple_AMPAR_
    traff_model2
    Pathway No. : 254
    		• 0
    (s^-1)    		0
    (s^-1)    		Not applicable**-Substrate
    IR*

    Product
    Bulk_AMPAR
    ** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration


    Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
    This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details.