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Molecule Parameter List for Degraded_tetR_mRNA | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by  color. | | Statistics |
| Degraded_tetR_mRNA participated as | Molecule | Sum total of | Enzyme | Substrate of an enzyme | Product of an enzyme | Substrate in Reaction | Product in Reaction | | No. of occurrences | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
Accession and Pathway Details | |
Degraded_tetR_mRNA acting as a Molecule in Repressilator Network
| Name | Accession Name | Pathway Name | Initial Conc.
(uM) | Volume
(fL) | Buffered | | Degraded_tetR_mRNA | Repressilator
Accession No. : 68 | TetR_gene
Pathway No. : 297 | 0 | 3 | Yes | | Degradation product of tetR m-RNA |
Degraded_tetR_mRNA acting as a Product in a reaction in Repressilator Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | tetR_mRNA_
degradation | Repressilator
Accession No. : 68 | TetR_gene
Pathway No. : 297 | 0.0058
(s^-1) | 0
(s^-1) | - | - | Substrate
tetR_mRNA
Product
Degraded_tetR_
mRNA
| | This reaction denotes the degradation of the tetR m-RNA, the half life of which is two minutes. t1/2 = 0.693/k where k denotes kf Elowitz, M. et al. (2000) Nature 403:335-338 |
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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