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Molecule Parameter List for PKM_synthesis

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by

color.

Statistics

*PKM_synthesis* participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	1	0	1	0	1	1	0

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
Ajay_Bhalla_ 2004_PKM_Tuning	76	Network	PKC, Shared_Object_Ajay_Bhalla_2004_PKM_tuning, PLA2, PLCbeta, Gq, MAPK, Ras, EGFR, Sos, PLC_g, CaMKII, CaM, PP1, PP2B, PKA, AC, PKM
This model is taken from the Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. This is the reference feedforward model from Figure 8a.

PKM_synthesis acting as a Molecule in Ajay_Bhalla_2004_PKM_Tuning Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
PKM_synthesis	Ajay_Bhalla_ 2004_PKM_Tuning Accession No. : 76	PKM Pathway No. : 328	0.0056	1.5	No

PKM_synthesis acting as an Enzyme in Ajay_Bhalla_2004_PKM_Tuning Network

Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
PKM_synthesis / kenz	Ajay_Bhalla_ 2004_PKM_Tuning Accession No. : 76	PKM Pathway No. : 328	9.99992	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

PKM_synthesis acting as a Product of an Enzyme in Ajay_Bhalla_2004_PKM_Tuning Network

Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
Ca.detector_ complex / kenz	Ajay_Bhalla_ 2004_PKM_Tuning Accession No. : 76	PKM Pathway No. : 328	5.00005	0.2	4	explicit E-S complex	Substrate PKM_activator Product PKM_synthesis

PKM_synthesis acting as a Substrate in a reaction in Ajay_Bhalla_2004_PKM_Tuning Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
turn_off_ activator	Ajay_Bhalla_ 2004_PKM_Tuning Accession No. : 76	PKM Pathway No. : 328	0.001 (s^-1)	0 (s^-1)	-	-	Substrate PKM_synthesis Product PKM_activator

Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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