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Molecule Parameter List for AA_pool

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by color.

Statistics

AA_pool participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	25	0	0	25	0	0	0

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13	82	Network	Shared_Object_Ajay_Bhalla_2007_ReacDiff1_1e-13,   PKC,  MAPK,  Ras,  CaM,  PKM,  chain,  kinetics,  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[1],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[2],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[3],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[4],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[5],   PKC,  MAPK,  Ras,  kinetics[6],  CaM,  PKM,  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[7],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[8],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[9],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[10],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[11],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[12],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[13],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[14],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[15],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[16],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[17],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[18],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[19],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[20],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[21],   PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[22],  PKC,  MAPK,  Ras,  CaM,  PKM,  kinetics[23],   PKC,  MAPK,  Ras,  CaM,  PKM
This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec. The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper. pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H. pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.

AA_pool acting as a Molecule in  Ajay_Bhalla_2007_ReacDiff1_1e-13 Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 531	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 538	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 544	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 550	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 556	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 562	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 569	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 574	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 580	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 586	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 592	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 598	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 604	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 610	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 616	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 622	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 628	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 634	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 640	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 646	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 652	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 658	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 664	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 670	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 676	1	1.5	Yes
Amino acid pool for synthesis.

AA_pool acting as a Substrate for an Enzyme in  Ajay_Bhalla_2007_ReacDiff1_1e-13 Network

	Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
1	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 531	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
2	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 538	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
3	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 544	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
4	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 550	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
5	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 556	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
6	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 562	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
7	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 569	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
8	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 574	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
9	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 580	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
10	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 586	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
11	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 592	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
12	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 598	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
13	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 604	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
14	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 610	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
15	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 616	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
16	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 622	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
17	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 628	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
18	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 634	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
19	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 640	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
20	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 646	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
21	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 652	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
22	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 658	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
23	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 664	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
24	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 670	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta
25	PKM_synthesis  / kenz	Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82	PKM Pathway No. : 676	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta