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Accession information for Ajay_Bhalla_2007_ReacDiff1_1e-13 (Accession Number 82)
Accession Basic Parameters
| Name ||Ajay_Bhalla_2007_ReacDiff1_1e-13 |
| Accession Type ||Network|
| Transcriber ||Upinder S. Bhalla, NCBS|
| Developer ||Upinder S. Bhalla, NCBS|
| Entry Date (YYYY-MM-DD) || 2006-12-08|
| Species ||Rat|
| Tissue ||Hippocampal CA1|
| Cell Compartment ||Dendrite|
| Source ||Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87|
| Methodology ||Semi-Quantitative match to experiments|
| Model Implementation ||Exact GENESIS implementation|
| Model Validation ||Replicates original data |
| Notes || This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.|
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
|Native Format (GENESIS format)|| acc82.g |
|Database compilation and code copyright (C) 2005, Upinder S. Bhalla and NCBS/TIFR |
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