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Molecule Parameter List for PP1_dash_active_c | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by  color. | | Statistics |
Accession and Pathway Details | |
| Accession Name | Accession No. | Accession Type | Pathway Link | Differential syn
thesis of mRNA | 95 | Network |
kinetics, compartment_1, compartment_2 | | The model consists of three major pathways: Calcium-calmodulin dependent protein kinase IV (CaMKIV), Mitogen-activated protein kinase (MAPK) and Protein Phosphatase 1 (PP1). Each of these converged on CREB activation. We also modeled further interactions with Transducer of regulated CREB activity 1 (TORC1) and the protein kinase A (PKA) pathway. |
PP1_dash_active_c acting as a Molecule in Differential synthesis of mRNA Network
| Name | Accession Name | Pathway Name | Initial Conc.
(uM) | Volume
(fL) | Buffered | | PP1_dash_active_c | Differential syn
thesis of mRNA
Accession No. : 95 | kinetics
Pathway No. : 1115 | 1.8 | 1000 | No | | Cohen et al Meth Enz 159 390-408 is main source of info conc = 1.8 uM |
PP1_dash_active_c acting as a Summed Molecule in Differential synthesis of mRNA Network
PP1_dash_active_c acting as a Substrate in a reaction in Differential synthesis of mRNA Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | Inact_dash_PP1 | Differential syn
thesis of mRNA
Accession No. : 95 | kinetics
Pathway No. : 1115 | 499.974
(uM^-1 s^-1) | 0.1
(s^-1) | Kd(bf) = 0.0002(uM) | - | Substrate
I1_star
PP1_dash_
active_c
Product
PP1_dash_I1_
star
| | K inhib = 1nM from Cohen Ann Rev Bioch 1989, 4 nM from Foukes et al Assume 2 nM. kf /kb = 8.333e-4 |
PP1_dash_active_c acting as a Product in a reaction in Differential synthesis of mRNA Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | dissoc_dash_
PP1_dash_I1 | Differential syn
thesis of mRNA
Accession No. : 95 | kinetics
Pathway No. : 1115 | 1
(s^-1) | 0
(uM^-1 s^-1) | - | - | Substrate
PP1_dash_I1
Product
I1
PP1_dash_
active_c
| | Let us assume that the equil in this case is very far over to the right. This is probably safe. |
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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