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Accession Type:
Pathway

Chemotaxis

		Chemotaxis
		Molecule
		Reaction

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Molecule List for pathway Chemotaxis (Pathway Number 228)

	Name	Initial Conc. (uM)	Volume (fL)	Buffered
1	Aspartate	0	1.41	Yes
	Aspartate = 0.0 uM As per Signal 0 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
2	Bias	0.768	1.41	No
	Bias calculated as per formula stated on pp.471 M + MYp Bias = ---------------------------------------- M + MYp + MYpYp + MYpYpYp + MYpYpYpYp Bray et al 1993, Mol.Biol.Cell 4: 469-482 Initialy set to 0.7
3	CheA	1.13	1.41	No
	CheA = 1.13e-06 M = 1.13 uM As per Signal in 1SIG_B.BCT provided by Matthew Levin CheA = 4250 molecules per cell As per Enzyme entry 4 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
4	CheAp	0.569	1.41	No
	CheAp = 5.69e-07 M = 5.69e-1 uM As per Signal entry 17 in 1SIG_B.BCT Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
5	CheB	1.62	1.41	No
	CheB = 1.62e-06 M = 1.62 uM As per Signal 18 in 1SIG_B.BCT provided by Matthew Levin CheB = 1700 molecules per cell As per Enzyme entry 2 in 1ENZ.BCT provided by Cell volume = 1.41e-15 L Bray et al 1993, Mol.Biol.Cell 4: 469-482 Table 1 pp.474
6	CheBp	0.381	1.41	No
	CheBp = 3.81e-07 M = 3.81e-1 uM As per Signal entry 19 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
7	CheW	1.37	1.41	No
	CheW = 1.37 uM As per Signal 5 in 1SIG_B.BCT provided by Matthew Levin CheW = 4250 molecules per cell As per Enzyme entry 3 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
8	CheY	9.88	1.41	No
	CheY = 9.88e-06 M = 9.88 uM As per Signal 21 in 1SIG_B.BCT provided by Matthew Levin CheY = 8500 molecules per cell As per Enzyme entry 5 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
9	CheYp	0.01	1.41	No
	CheYp = 1.24e-07 M = 1.24e-01 uM As per Signal 22 in 1SIG_B.BCT provided by Matthew Levin CheYp = 1e-08 M = 1e-2 uM As per Set_Yp configuration in 1CONFIG.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
10	CheZ	20	1.41	No
	CheZ = 2.00e-05 M = 20 uM As per Signal 20 in 1SIG_B.BCT provided by Matthew Levin CheZ = 17000 molecules per cell As per Enzyme entry 6 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
11	CW_rotation	0	1.41	No
	Sum total of MYpYpYp and MYpYpYpYp which is responsible for CW rotation of the flagella Bray et al 1993, Mol.Biol.Cell 4: 469-482
12	Denominator	0	1.41	No
	Denominator value to calculate bias as stated on pp.471Bias = [ M + MYp ] / [M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482
13	Motor	0.0067	1.41	No
	Motor = 8.5 molecules per cell As per Enzyme entry 7 in 1ENZ.BCT provided by Matthew Levin Motor = 6.73e-9 M = 6.73e-3 uM As per Signal 23 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
14	MYp	0.001	1.41	No
	MYp = 9.53e-10 M = 9.53e-4 uM As per Signal 24 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
15	MYpYp	0.0004	1.41	No
	MYpYp = 3.66e-10 M = 3.66e-4 uM As per Signal 25 in 1SIG_B.BCT provided by Matthew Levin MYpYp is responsible for pause in rotation of flagella Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
16	MYpYpYp	0.0004	1.41	No
	MYpYpYp = 4.47e-10 M = 4.47e-4 uM As per Signal 26 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
17	MYpYpYpYp	0.0015	1.41	No
	MYpYpYpYp = 1.51e-09 M = 1.51e-3 uM As per Signal 27 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
18	Ni	0	1.41	No
	Ni = 0.0 uM As per Signal 1 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
19	Numerator	0	1.41	No
	Numerator value to calculate bias as stated on pp.471 Bias = [M + MYp] / [M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482
20	Ta	0	1.41	No
	Aspartate bound Tar Ta = 0.0 M As per Signal 3 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
21	TA	1.55	1.41	No
	Tar-CheA complex TA = 1.55e-06 M = 1.55 uM As per Signal entry 9 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
22	TaA	0	1.41	No
	Tar-Asp-CheA complex TaA = 0 M As per Signal 10 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
23	Tar	1.37	1.41	No
	Tar = 1.37e-06 M = 1.37 uM As per Signal 2 in 1SIG_B.BCT provided by Matthew Levin Tar = 4250 molecules per cell As per Enzyme entry 0 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
24	TaW	0	1.41	No
	Aspartate bound Tar and CheW complex TaW = 0 M As per Signal 7 in 1SIG_B.BCT Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
25	TaWA	0	1.41	No
	Tar-CheW-CheA-Aspartate complex TaWA = 0 M As per Signal 14 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Bray et al 1993, Mol.Biol.Cell 4: 469-482 Table 1. pp.474
26	Tn	0	1.41	No
	Ni bound Tar Ni-Tar = 0 M As per Signal 4 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
27	TnA	0	1.41	No
	Tar-Ni-CheA complex TnA = 0 M As per Signal 11 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
28	TnW	0	1.41	No
	Nickel bound Tar and CheW complex TnW = 0.0 uM As per Signal 8 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
29	TnWA	0	1.41	No
	Tar-Ni-CheW-CheA complex TnWA = 0 M As per Signal 15 in 1SIG.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
30	TW	1.88	1.41	No
	Tar-CheW complex TW = 1.88e-06 M = 1.88 uM As per Signal entry 3 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
31	TWA	0.212	1.41	No
	Tar-CheW-CheA complex TWA = 2.12e-07 M = 2.12e-1 uM As per Signal entry 13 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
32	WA	1.55	1.41	No
	CheA and CheW complex formation Kf = 5*10e+04 /sec/M = 0.05 /sec/uM As per Reaction 4 in 1REACT.BCT provided by Matthew Levin Kf = 0.01 /sec/uM Kb = 1 /sec Bray et al 1993, Mol.Biol.Cell 4: 469-482 Table 3 pp.476 Reaction Scheme 5

Summed Molecule List

	Target	Inputs
1	CW_rotation	MYpYpYpYp MYpYpYp
Sum total of MYpYpYp and MYpYpYpYp which is responsible for CW rotation of the flagella Bray et al 1993, Mol.Biol.Cell 4: 469-482
2	Denominator	MYpYp MYpYpYp MYpYpYpYp MYp Motor
Denominator value to calculate bias as stated on pp.471Bias = [ M + MYp ] / [M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482
3	Numerator	MYp Motor
Numerator value to calculate bias as stated on pp.471 Bias = [M + MYp] / [M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482

Pathway Details Molecule List Enzyme List Reaction List

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