| | Name | Initial Conc. (uM) | Volume (fL) | Buffered |
| 1 | 2_LuxR-AI | 0 | 3 | No |
| | Dimer of Lux R - AI complex |
| 2 | AI-1 | 0 | 3 | No |
| | AI translated from luxI m-RNA Garcia-Ojalvo, J. et al. (2004) PNAS USA 101(30):10955-10960 As described for components of the Repressilator by Elowitz, M. et al. (2000) Nature 403:335-338 |
| 3 | Amino_Acids | 0.0006 | 3 | Yes |
| | |
| 4 | Degraded_2_LuxR-AI | 0 | 3 | Yes |
| | Degradation product of the dimer of the complex of Lux R with AI |
| 5 | Degraded_AI | 0 | 3 | Yes |
| | Degradation product of autoinducer. |
| 6 | degraded_LuxI | 0 | 3 | Yes |
| | |
| 7 | Degraded_luxI_mRNA | 0 | 3 | Yes |
| | Degradation product of lux I m-RNA |
| 8 | Degraded_LuxR-AI | 0 | 3 | Yes |
| | Degradation product of the complex of Lux R with AI |
| 9 | LuxI | 0 | 3 | No |
| | |
| 10 | luxI_mRNA | 0 | 3 | No |
| | The m-RNA transcribed by the luxI operator Garcia-Ojalvo, J. et al. (2004) PNAS USA 101(30):10955-10960 As described for components of the Repressilator by Elowitz, M. et al. (2000) Nature 403:335-338 |
| 11 | LuxI_operator | 0.0222 | 3 | No |
| | The LuxI operator under normal conditions drives transcription of LuxI Garcia-Ojalvo, J. et al. (2004) PNAS USA 101(30):10955-10960 As described for components of the Repressilator by Elowitz, M. et al. (2000) Nature 403:335-338 |
| 12 | LuxI_operator_1st_bound | 0 | 3 | No |
| | This represents the promoter with one of its sites bound by the inhibitor. Garcia-Ojalvo, J. et al. (2004) PNAS USA 101(30):10955-10960 As described for components of the Repressilator by Elowitz, M. et al. (2000) Nature 403:335-338 |
| 13 | LuxI_operator_2nd_bound | 0 | 3 | No |
| | This represents the promoter with both of its sites bound by the inhibitor. Garcia-Ojalvo, J. et al. (2004) PNAS USA 101(30):10955-10960 As described for components of the Repressilator by Elowitz, M. et al. (2000) Nature 403:335-338 |
| 14 | LuxR | 0.0556 | 3 | Yes |
| | Lux R assumed to be constitutively produced. |
| 15 | LuxR-AI | 0 | 3 | No |
| | Lux R complexed with AI |
| 16 | Nucleotides | 0.0006 | 3 | Yes |
| | |
