| | CaM |
Enter a Search String | Special character and space not allowed in the query term.
Search string should be at least 2 characters long. |
Parameters for PKM (Pathway Number 569) Pathway Layout
Pathway Basic Parameters Pathway Name | PKM | Pathway Entry Number | 569 | Accession Number | 82 | Accession Name | Ajay_Bhalla_2007_ReacDiff1_1e-13 | Species | Rat | Tissue | Hippocampal CA1 | CellCompartment | Dendrite | Related Pathways | 328,
346,
374,
380,
387,
393,
399,
406,
412,
419,
424,
429,
435,
441,
447,
453,
459,
465,
471,
477,
483,
489,
495,
501,
507,
513,
519,
525,
531,
538,
544,
550,
556,
562,
574,
580,
586,
592,
598,
604,
610,
616,
622,
628,
634,
640,
646,
652,
658,
664,
670,
676,
682,
689,
696,
702,
707,
713,
719,
725,
731,
737,
743,
749,
755,
761,
767,
773,
779,
785,
791,
797,
803,
809,
815,
821,
827,
833,
839,
845,
851,
857,
863,
869,
875,
881,
887,
893,
899,
905,
911,
917
| Notes | This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
| Statistics Conversion formatThis pathway is part of accession 82 and is completely specified in the file acc82.g. There is no separate for just this pathway. |
Pathway Detail Molecule List Enzyme List Reaction List
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details. |
|