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Parameters for Shared Object_Ajay_Bhalla_2007_ReacDiff1_1e-13_[15] (Pathway Number 623) Pathway Layout
Pathway Basic Parameters | Pathway Name | Shared Object_Ajay_Bhalla_2007_ReacDiff1_1e-13_[15] | | Pathway Entry Number | 623 | | Accession Number | 82 | | Accession Name | Ajay_Bhalla_2007_ReacDiff1_1e-13 | | Species | Rat | | Tissue | Hippocampal CA1 | | CellCompartment | Dendrite | | Related Pathways | 472,
774,
1015
| | Notes | This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
| Statistics Conversion formatThis pathway is part of accession 82 and is completely specified in the file acc82.g.
There is no separate for just this pathway. |
Pathway Detail Molecule List Enzyme List Reaction List
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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