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Chemotaxis
Chemotaxis
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Molecule List for pathway Chemotaxis (Pathway Number 226)

 Name Initial Conc. (uM) Volume (fL) Buffered
1Aspartate01.41Yes
    Aspartate = 0.0 uM As per Signal 0 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
2Bias0.7681.41No
    Bias calculated as per formula stated on pp.471 M + MYp Bias = ---------------------------------------- M + MYp + MYpYp + MYpYpYp + MYpYpYpYp Bray et al 1993, Mol.Biol.Cell 4: 469-482 Initialy set to 0.7
3CheA1.131.41No
    CheA = 1.13e-06 M = 1.13 uM As per Signal in 1SIG_B.BCT provided by Matthew Levin CheA = 4250 molecules per cell As per Enzyme entry 4 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
4CheAp0.5691.41No
    CheAp = 5.69e-07 M = 5.69e-1 uM As per Signal entry 17 in 1SIG_B.BCT Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
5CheB1.621.41No
    CheB = 1.62e-06 M = 1.62 uM As per Signal 18 in 1SIG_B.BCT provided by Matthew Levin CheB = 1700 molecules per cell As per Enzyme entry 2 in 1ENZ.BCT provided by Cell volume = 1.41e-15 L Bray et al 1993, Mol.Biol.Cell 4: 469-482 Table 1 pp.474
6CheBp0.3811.41No
    CheBp = 3.81e-07 M = 3.81e-1 uM As per Signal entry 19 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
7CheW1.371.41No
    CheW = 1.37 uM As per Signal 5 in 1SIG_B.BCT provided by Matthew Levin CheW = 4250 molecules per cell As per Enzyme entry 3 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
8CheY9.881.41No
    CheY = 9.88e-06 M = 9.88 uM As per Signal 21 in 1SIG_B.BCT provided by Matthew Levin CheY = 8500 molecules per cell As per Enzyme entry 5 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
9CheYp0.011.41No
    CheYp = 1.24e-07 M = 1.24e-01 uM As per Signal 22 in 1SIG_B.BCT provided by Matthew Levin CheYp = 1e-08 M = 1e-2 uM As per Set_Yp configuration in 1CONFIG.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
10CheZ201.41No
    CheZ = 2.00e-05 M = 20 uM As per Signal 20 in 1SIG_B.BCT provided by Matthew Levin CheZ = 17000 molecules per cell As per Enzyme entry 6 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
11CW_rotation01.41No
    Sum total of MYpYpYp and MYpYpYpYp which is responsible for CW rotation of the flagella Bray et al 1993, Mol.Biol.Cell 4: 469-482
12Denominator01.41No
    Denominator value to calculate bias as stated on pp.471 Bias = [M + MYp]/[M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482
13Motor0.00671.41No
    Motor = 8.5 molecules per cell As per Enzyme entry 7 in 1ENZ.BCT provided by Matthew Levin Motor = 6.73e-9 M = 6.73e-3 uM As per Signal 23 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
14MYp0.0011.41No
    MYp = 9.53*e-10 M = 9.53*e-4 uM As per Signal 24 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
15MYpYp0.00041.41No
    MYpYp = 3.66e-10 M = 3.66e-4 uM As per Signal 25 in 1SIG_B.BCT provided by Matthew Levin MYpYp is responsible for pause in rotation of flagella Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
16MYpYpYp0.00041.41No
    MYpYpYp = 4.47e-10 M = 4.47e-4 uM As per Signal 26 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
17MYpYpYpYp0.00151.41No
    MYpYpYpYp = 1.51e-09 M = 1.51e-3 uM As per Signal 27 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
18Ni01.41No
    Ni = 0.0 uM As per Signal 1 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
19Numerator01.41No
    Numerator value to calculate bias as stated on pp.471 Bias = [M + MYp]/[M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482
20Ta01.41No
    Aspartate bound Tar Ta = 0.0 M As per Signal 3 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
21TA1.551.41No
    Tar-CheA complex TA = 1.55e-06 M = 1.55 uM As per Signal entry 9 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
22TaA01.41No
    Tar-Asp-CheA complex TaA = 0 M As per Signal 10 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
23Tar1.371.41No
    Tar = 1.37e-06 M = 1.37 uM As per Signal 2 in 1SIG_B.BCT provided by Matthew Levin Tar = 4250 molecules per cell As per Enzyme entry 0 in 1ENZ.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
24TaW01.41No
    Aspartate bound Tar and CheW complex TaW = 0 M As per Signal 7 in 1SIG_B.BCT Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
25TaWA01.41No
    Tar-CheW-CheA-Aspartate complex TaWA = 0 M As per Signal 14 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Bray et al 1993, Mol.Biol.Cell 4: 469-482 Table 1. pp.474
26Tn01.41No
    Ni bound Tar Ni-Tar = 0 M As per Signal 4 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
27TnA01.41No
    Tar-Ni-CheA complex TnA = 0 M As per Signal 11 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
28TnW01.41No
    Nickel bound Tar and CheW complex TnW = 0.0 uM As per Signal 8 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
29TnWA01.41No
    Tar-Ni-CheW-CheA complex TnWA = 0 M As per Signal 15 in 1SIG.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
30TW1.881.41No
    Tar-CheW complex TW = 1.88e-06 M = 1.88 uM As per Signal entry 3 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
31TWA0.2121.41No
    Tar-CheW-CheA complex TWA = 2.12e-07 M = 2.12e-1 uM As per Signal entry 13 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482
32WA1.551.41No
    CheW-CheA complex WA = 1.55e-6 M = 1.55 uM As per Signal 12 in 1SIG_B.BCT provided by Matthew Levin Cell volume = 1.41e-15 L Table 1 pp.474 Bray et al 1993, Mol.Biol.Cell 4: 469-482

Summed Molecule List

  Target Inputs
1 CW_rotationMYpYpYpYp
MYpYpYp
Sum total of MYpYpYp and MYpYpYpYp which is responsible for CW rotation of the flagella Bray et al 1993, Mol.Biol.Cell 4: 469-482
2 DenominatorMYpYp
MYpYpYp
MYpYpYpYp
MYp
Motor
Denominator value to calculate bias as stated on pp.471 Bias = [M + MYp]/[M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482
3 NumeratorMYp
Motor
Numerator value to calculate bias as stated on pp.471 Bias = [M + MYp]/[M + MYp + MYpYp + MYpYpYp + MYpYpYpYp] Bray et al 1993, Mol.Biol.Cell 4: 469-482


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