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Molecule Parameter List for IP4(1456)_ER | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by  color. | | Statistics |
Accession and Pathway Details | |
| Accession Name | Accession No. | Accession Type | Pathway Link | Osc_Ca_
IP3metabolism | 24 | Network |
MIPP, CaMKII, CaM,
PKC, IP3-3K, Gq,
PLCbeta, 134_dephos, 145_dephos,
IP4-system, IHP-system, 1345_dephos,
CaRegulation, Othmer-Tang-model | | This network models an oscillatory calcium response to GPCR mediated PLCbeta activation, alongwith detailed InsP3 metabolism in the neuron. It differs from the NonOsc_Ca_IP3metabolism network in the CaRegulation module and in InsP3 receptor kinetics. Details of InsP3 receptor kinetics have been adapted from the Othmer-Tang model for oscillatory Ca dynamics. Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. |
IP4(1456)_ER acting as a Molecule in Osc_Ca_IP3metabolism Network
| Name | Accession Name | Pathway Name | Initial Conc.
(uM) | Volume
(fL) | Buffered | | IP4(1456)_ER | Osc_Ca_
IP3metabolism
Accession No. : 24 | MIPP
Pathway No. : 120 | 0 | 160 | No | | |
IP4(1456)_ER acting as a Product of an Enzyme in Osc_Ca_IP3metabolism Network
Enzyme Molecule /
Enzyme Activity | Accession Name | Pathway Name | Km (uM) | kcat (s^-1) | Ratio | Enzyme Type | Reagents | MIPP /
ip5_3pase | Osc_Ca_
IP3metabolism
Accession No. : 24 | MIPP
Pathway No. : 120 | 0.0400005 | 0.2321 | 4 | explicit E-S complex | Substrate
IP5(13456)_ER
Product
IP4(1456)_ER
| | Ins(13456)P5 3-phosphatase from Nogimori et al, JBC 266; 1991 |
IP4(1456)_ER acting as a Substrate in a reaction in Osc_Ca_IP3metabolism Network
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | | ip4(1456)_trp | Osc_Ca_
IP3metabolism
Accession No. : 24 | MIPP
Pathway No. : 120 | 1
(s^-1) | 0.001
(s^-1) | Not applicable** | - | Substrate
IP4(1456)_ER
Product
IP4(1456)
| | Ins(1456)P4 ER-cytosol transport |
** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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