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Molecule Parameter List for AA_pool

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by

color.

Statistics

*AA_pool* participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	25	0	0	25	0	0	0

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
Ajay_bhalla_ 2007_ReacDiff1_ 1e-12	81	Network	Shared_Object_Ajay_bhalla_2007_ReacDiff1_1e-12, PKC, MAPK, Ras, CaM, PKM, chain, kinetics, PKC, MAPK, Ras, CaM, PKM, kinetics[1], PKC, MAPK, Ras, CaM, PKM, kinetics[2], PKC, MAPK, Ras, CaM, PKM, kinetics[3], PKC, MAPK, MAPK, Ras, CaM, PKM, kinetics[4], PKC, MAPK, Ras, CaM, PKM, kinetics[5], PKC, MAPK, Ras, kinetics[6], CaM, PKM, PKC, MAPK, Ras, CaM, PKM, kinetics[7], PKC, Ras, CaM, PKM, kinetics[8], PKC, MAPK, Ras, CaM, PKM, kinetics[9], PKC, MAPK, Ras, CaM, PKM, kinetics[10], PKC, MAPK, Ras, CaM, PKM, kinetics[11], PKC, MAPK, Ras, CaM, PKM, kinetics[12], PKC, MAPK, Ras, CaM, PKM, kinetics[13], PKC, MAPK, Ras, CaM, PKM, kinetics[14], PKC, MAPK, Ras, CaM, PKM, kinetics[15], PKC, MAPK, Ras, CaM, PKM, kinetics[16], PKC, MAPK, Ras, CaM, PKM, kinetics[17], PKC, MAPK, Ras, CaM, PKM, kinetics[18], PKC, MAPK, Ras, CaM, PKM, kinetics[19], PKC, MAPK, Ras, CaM, PKM, kinetics[20], PKC, MAPK, Ras, CaM, PKM, kinetics[21], PKC, MAPK, Ras, CaM, PKM, kinetics[22], PKC, MAPK, Ras, CaM, PKM, kinetics[23], PKC, MAPK, Ras, CaM, PKM
This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec. The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper. This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper

AA_pool acting as a Molecule in Ajay_bhalla_2007_ReacDiff1_1e-12 Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 380	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 387	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 393	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 399	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 406	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 412	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 419	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 424	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 429	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 435	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 441	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 447	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 453	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 459	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 465	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 471	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 477	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 483	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 489	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 495	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 501	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 507	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 513	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 519	1	1.5	Yes
Amino acid pool for synthesis.
AA_pool	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 525	1	1.5	Yes
Amino acid pool for synthesis.

AA_pool acting as a Substrate for an Enzyme in Ajay_bhalla_2007_ReacDiff1_1e-12 Network

	Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
1	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 380	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

2	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 387	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

3	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 393	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

4	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 399	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

5	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 406	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

6	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 412	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

7	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 419	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

8	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 424	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

9	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 429	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

10	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 435	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

11	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 441	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

12	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 447	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

13	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 453	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

14	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 459	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

15	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 465	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

16	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 471	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

17	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 477	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

18	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 483	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

19	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 489	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

20	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 495	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

21	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 501	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

22	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 507	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

23	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 513	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

24	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 519	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

25	PKM_synthesis / kenz	Ajay_bhalla_ 2007_ReacDiff1_ 1e-12 Accession No. : 81	PKM Pathway No. : 525	9.99978	0.05	4	explicit E-S complex	Substrate AA_pool Product PKM-zeta

Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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