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Result: 21 - 40 of 51 rows are displayed Previous of 3  Next

Molecule List for pathway Shared_Object_AMPAR_CaMKII_strong_coupling (Pathway Number 271) in Accession AMPAR_CaMKII_strong_coupling (Accession Number 64)

Default ordering is done according to Pathway Number. Table headers can be used for changing the default ordering.
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The entries are grouped according to Pathway Number and are alternately color coded using  and  color.
  NameAccession
Type		Initial
Conc.
(uM)		Volume
(fL)		BufferedSum Total Of
21 
  • CaMKII-thr286-PS
    D
    		• Network00No- 
    22 
  • CaMKII-thr305-PS
    D
    		• Network00No- 
    23 cAMPNetwork00No- 
        The conc of this has been a problem. Schaecter and Benowitz use 50 uM, but Shinomura et al have < 5. So I have altered the cAMP-dependent rates in the PKA model to reflect this.
    24 CaM_Ca_n-CaNABNetwork00No- 
    25 CaNAB-Ca4Network00No- 
    26 Ca_control_cytNetwork0.080Yes- 
    27 Ca_control_PSDNetwork0.080Yes- 
    28 I_845Network00No A831*_B831*
     A_B831*
     A831*_B
     A_B
    29 I_845-PNetwork00No A831*845*_B831*
     A845*_B831*
     A831*845*_B
     A845*_B
     A831*_B831*845*
     A_B831*845*
     A831*_B845*
     A_B845*
    30 I_845_PPNetwork00No
  •  A835*845*_
    B835*845*
     A845*_B831*845*
     A831*845*_B845*
     A845*_B845*
    • 31 NMDARNetwork1200No- 
        The stochiometry is a bit off here. Each NMDAR actually binds to a holoenzyme, about 12 CaMKII subunits. But our CaMKII calculations are in terms of individual subunits. So as a hack, we put in much more NMDAR than is actually there.
    32 PKA-activeNetwork00No- 
    33 PKC-activeNetwork0.10No- 
    34 PKC-controlNetwork0.10Yes- 
    35 PP1-activeNetwork1.80No- 
        Cohen et al Meth Enz 159 390-408 is main source of info conc = 1.8 uM
    36 PP1-active_PSDNetwork80No- 
        Cohen et al Meth Enz 159 390-408 is main source of info conc = 1.8 uM
    37 PP2ANetwork0.11110No- 
    38 Ser831Network00No A845*_B845*
     A_B845*
     A845*_B
     A_B
    39 Ser831-PNetwork00No A831*845*_B845*
     A845*_B831*845*
     A831*_B845*
     A_B831*845*
     A831*845*_B
     A845*_B831*
     A831*_B
     A_B831*
    40 Ser831-PPNetwork00No
  •  A835*845*_
    B835*845*
     A831*_B831*845*
     A831*845*_B831*
     A831*_B831*
    •  
    Result: 21 - 40 of 51 rows are displayed Previous of 3  Next


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