DOQCS database

NCBS Home page

Accession List

Pathway List

Authorized Users

Help

News archives

Enter a Search String

Special character and space not allowed in the query term. Search string should be at least 2 characters long.

Molecule List for Accession AMPAR_CaMKII_strong_coupling (Accession Number64)

Default ordering is done according to Pathway Number. Table headers can be used for changing the default ordering.

arrow indicates that ordering is done according to ascending or descending order.
The entries are grouped according to Pathway Number and are alternately color coded using

and

color.

	Name	Pathway Name / Pathway No.	Accession Type	Initial Conc. (uM)	Volume (fL)	Buffered	Sum Total Of
1	CaM-Ca4	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.09	No	-
2	PP1-active	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	1.8	0.09	No	-
	Cohen et al Meth Enz 159 390-408 is main source of info conc = 1.8 uM
3	cAMP	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.09	No	-
	The conc of this has been a problem. Schaecter and Benowitz use 50 uM, but Shinomura et al have < 5. So I have altered the cAMP-dependent rates in the PKA model to reflect this.
4	Ca	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0.08	0.09	No	-
5	PKA-active	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.09	No	-
6	CaM-Ca3	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.09	No	-
7	CaM-TR2-Ca2	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.09	No	-
	This is the intermediate where the TR2 end (the high-affinity end) has bound the Ca but the TR1 end has not.
8	PP2A	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0.1111	0.09	No	-
9	CaNAB-Ca4	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.09	No	-
10	CaMKII-thr286-Ca M-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.01	No	-
11	CaMKII-CaM-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.01	No	-
12	CaMKII-thr286-PS D	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.01	No	-
13	CaMKII-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.01	No	-
14	CaMKII***-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.01	No	-
15	CaM-TR2-Ca2-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.01	No	-
	This is the intermediate where the TR2 end (the high-affinity end) has bound the Ca but the TR1 end has not.
16	CaM-Ca3-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0.0025	0.01	No	-
17	CaM-Ca4-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0	0.01	No	-
18	Ca-PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0.08	0.01	No	-
19	PP1-active_PSD	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	8	0.01	No	-
	Cohen et al Meth Enz 159 390-408 is main source of info conc = 1.8 uM
20	PKC-active	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	Network	0.1	0.09	No	-

Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details.