Enter a Search String

Special character and space not allowed in the query term. Search string should be at least 2 characters long.

Search in:

ALL Accession Pathway Molecule Enzyme Reaction Connected to

Search for

Match

Anything Exact Word Starting With

By

Name Notes Model

Molecule Parameter List for Grb

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by color.

Statistics

Grb participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	1	0	0	0	0	3	1

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
EGFR_Signaling_ pathway	52	Pathway	EGFR
This model is based on the model and parameters published in paper: Quantification of Short Term Signaling by the EGFR Kholodenko et al, The J Biol Chem. , Vol 274, No. 42, Issue of October 15, pp. 30169 - 30181, 1999. Note: There are a few small ambiguities in the paper about initial conditions employed for obtaining the results. Thanks to Dr. Kholodenko for clarifying those ambiguities and providing the values used in the simulations:[G-S]=33.04579, [Grb]=51.95431, [SOS]=0.95421.

Grb acting as a Molecule in  EGFR_Signaling_pathway Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
Grb	EGFR_Signaling_ pathway Accession No. : 52	EGFR Pathway No. : 223	0.052	1.6667E-6	No
Taken from Kholodenko BN et al J Biol Chem. (1999) 274(42):30169-81. To obtain plots as per figure-4 and 5 [Grb] is set to 51.954nM. instead of 85nM. Thanks to Dr. Boris N. Kholodenko for clarifying the ambiguity and furnishing us the above value. To obtain plots as per figure-7A [Grb] is set to 340nM (4-fold increase).

Grb acting as a Substrate in a reaction in  EGFR_Signaling_pathway Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

	Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
1	r17	EGFR_Signaling_ pathway Accession No. : 52	EGFR Pathway No. : 223	3 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0333(uM)	-	Substrate Grb R-ShP Product R-Sh-G
	Taken from Kholodenko BN et al J Biol Chem. (1999) 274(42):30169-81.
2	r21	EGFR_Signaling_ pathway Accession No. : 52	EGFR Pathway No. : 223	3 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0333(uM)	-	Substrate Grb ShP Product Sh-G
	Taken from Kholodenko BN et al J Biol Chem. (1999) 274(42):30169-81.
3	r9	EGFR_Signaling_ pathway Accession No. : 52	EGFR Pathway No. : 223	3 (uM^-1 s^-1)	0.05 (s^-1)	Kd(bf) = 0.0167(uM)	-	Substrate Grb RP Product R-G
	Taken from Kholodenko BN et al J Biol Chem. (1999) 274(42):30169-81.

Grb acting as a Product in a reaction in  EGFR_Signaling_pathway Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
r12	EGFR_Signaling_ pathway Accession No. : 52	EGFR Pathway No. : 223	0.0015 (s^-1)	0.1 (uM^-1 s^-1)	Kd(cb) = 66.6667(uM)	-	Substrate G-S Product Grb SOS
Taken from Kholodenko BN et al J Biol Chem. (1999) 274(42):30169-81.