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Molecule Parameter List for PKC-active

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by

color.

Statistics

*PKC-active* participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	1	0	5	0	0	0	1

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
AMPAR_traff_ model0	59	Network	Shared_Object_AMPAR_traff_model0, CaMKII, CaM, PP1, PP2B, PP1_PSD, PKA, AC, AMPAR, AMPAR_memb
This is model 0 from Hayer and Bhalla, PLoS Comput Biol 2005. It has a bistable model of AMPAR traffick, plus a non-bistable model of CaMKII. This differs from the reference model (model 1) in that model0 lacks degradation and turno ver reactions for AMPAR.

PKC-active acting as a Molecule in AMPAR_traff_model0 Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
PKC-active	AMPAR_traff_ model0 Accession No. : 59	Shared_Object_ AMPAR_traff_ model0 Pathway No. : 234	0.1	0.09	No

PKC-active acting as an Enzyme in AMPAR_traff_model0 Network

	Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
1	PKC-active / PKC-phosph-neuro granin	AMPAR_traff_ model0 Accession No. : 59	Shared_Object_ AMPAR_traff_ model0 Pathway No. : 234	28.6273	0.58	4.03448	explicit E-S complex	Substrate neurogranin Product neurogranin*
	Rates from Huang et al ABB 305:2 570-580 1993
2	PKC-active / PKC-phosph-ng-Ca M	AMPAR_traff_ model0 Accession No. : 59	Shared_Object_ AMPAR_traff_ model0 Pathway No. : 234	28.5956	0.35	4	explicit E-S complex	Substrate neurogranin-CaM Product CaM neurogranin*
	Rates are 60% those of PKC-phosph-neurogranin. See Huang et al ABB 305:2 570-580 1993
3	PKC-active / phosph-AC2	AMPAR_traff_ model0 Accession No. : 59	Shared_Object_ AMPAR_traff_ model0 Pathway No. : 234	33.3337	4	4	explicit E-S complex	Substrate AC2 Product AC2*
	Phorbol esters have little effect on AC1 or on the Gs-stimulation of AC2. So in this model we are only dealing with the increase in basal activation of AC2 induced by PKC k1 = 1.66e-6 k2 = 16 k3 =4
4	PKC-active / PKC-phosph-neuro granin_ PSD	AMPAR_traff_ model0 Accession No. : 59	Shared_Object_ AMPAR_traff_ model0 Pathway No. : 234	28.6273	0.58	4.03448	explicit E-S complex	Substrate neurogranin_PSD Product neurogranin*_ PSD
	Rates from Huang et al ABB 305:2 570-580 1993
5	PKC-active / PKC-phosph-ng-Ca M_ PSD	AMPAR_traff_ model0 Accession No. : 59	Shared_Object_ AMPAR_traff_ model0 Pathway No. : 234	28.5956	0.35	4	explicit E-S complex	Substrate neurogranin-CaM_ PSD Product CaM-PSD neurogranin*_ PSD
	Rates are 60% those of PKC-phosph-neurogranin. See Huang et al ABB 305:2 570-580 1993

PKC-active acting as a Product in a reaction in AMPAR_traff_model0 Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
PKC-stoch-input	AMPAR_traff_ model0 Accession No. : 59	Shared_Object_ AMPAR_traff_ model0 Pathway No. : 234	2.5 (s^-1)	2.5 (s^-1)	Keq = 1(uM)	0.2sec	Substrate PKC-control Product PKC-active

Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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