DOQCS database

NCBS Home page

Accession List

Pathway List

Authorized Users

Help

News archives

Enter a Search String

Special character and space not allowed in the query term. Search string should be at least 2 characters long.

Molecule Parameter List for A831_B831845*

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by

color.

Statistics

A831_B831845* participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	2	3	0	7	7	0	0

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
AMPAR_traff_ model0	59	Network	Shared_Object_AMPAR_traff_model0, CaMKII, CaM, PP1, PP2B, PP1_PSD, PKA, AC, AMPAR, AMPAR_memb
This is model 0 from Hayer and Bhalla, PLoS Comput Biol 2005. It has a bistable model of AMPAR traffick, plus a non-bistable model of CaMKII. This differs from the reference model (model 1) in that model0 lacks degradation and turno ver reactions for AMPAR.

A831*_B831*845* acting as a Molecule in AMPAR_traff_model0 Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
A831_B831845*	AMPAR_traff_ model0 Accession No. : 59	AMPAR Pathway No. : 242	0	0.09	No

A831_B831845*	AMPAR_traff_ model0 Accession No. : 59	AMPAR_memb Pathway No. : 243	0	0.01	No

A831*_B831*845* acting as a Summed Molecule in AMPAR_traff_model0 Network

	Accession Nane	Pathway Name	Target	Input
1	AMPAR_traff_ model0 Accession No. : 59	AMPAR Pathway No. : 242	I_845-P	A831845_B831* A845_B831 A831845_B A845_B A831_B831845 A_B831845 A831_B845 A_B845*
2	AMPAR_traff_ model0 Accession No. : 59	AMPAR_memb Pathway No. : 243	Ser845-P	A845_B A831845_B A845_B831* A831845_B831* A_B845* A831_B845 A_B831845 A831_B831845*
3	AMPAR_traff_ model0 Accession No. : 59	AMPAR_memb Pathway No. : 243	Ser831-PP	A835845_ B835845 A831_B831845* A831845_B831* A831_B831

A831*_B831*845* acting as a Substrate for an Enzyme in AMPAR_traff_model0 Network

	Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
1	CaM_Ca_n-CaNAB / PP2B[24]	AMPAR_traff_ model0 Accession No. : 59	PP2B Pathway No. : 238	4.97061	2	4	explicit E-S complex	Substrate A831_B831845* Product A831_B831
2	CaM_Ca_n-CaNAB / PP2B[15]	AMPAR_traff_ model0 Accession No. : 59	PP2B Pathway No. : 238	4.97061	2	4	explicit E-S complex	Substrate A831_B831845* Product A831_B831
3	PKA-active / PKA[27]	AMPAR_traff_ model0 Accession No. : 59	PKA Pathway No. : 240	7.50021	6	4	explicit E-S complex	Substrate A831_B831845* Product A835845_ B835845
4	PKA-active / PKA[12]	AMPAR_traff_ model0 Accession No. : 59	PKA Pathway No. : 240	7.50021	6	4	explicit E-S complex	Substrate A831_B831845* Product A835845_ B835845
5	PP1-active_PSD / PP1[18]	AMPAR_traff_ model0 Accession No. : 59	PP1_PSD Pathway No. : 239	0.971451	0.17	4	explicit E-S complex	Substrate A831_B831845* Product A831_B831
6	PP1-active_PSD / PP1[25]	AMPAR_traff_ model0 Accession No. : 59	PP1_PSD Pathway No. : 239	2.00005	0.35	4	explicit E-S complex	Substrate A831_B831845* Product A_B831845
7	PP1-active_PSD / PP1[29]	AMPAR_traff_ model0 Accession No. : 59	PP1_PSD Pathway No. : 239	2.00005	0.35	4	explicit E-S complex	Substrate A831_B831845* Product A831_B845

A831*_B831*845* acting as a Product of an Enzyme in AMPAR_traff_model0 Network

	Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
1	actCaMKII-PSD / CaMKII[9]	AMPAR_traff_ model0 Accession No. : 59	CaMKII Pathway No. : 235	90.0006	0.5	4	explicit E-S complex	Substrate A_B831845 Product A831_B831845*
2	actCaMKII-PSD / CaMKII[13]	AMPAR_traff_ model0 Accession No. : 59	CaMKII Pathway No. : 235	90.0006	0.5	4	explicit E-S complex	Substrate A831_B845 Product A831_B831845*
3	CaM_Ca_n-CaNAB / PP2B[28]	AMPAR_traff_ model0 Accession No. : 59	PP2B Pathway No. : 238	4.97061	2	4	explicit E-S complex	Substrate A835845_ B835845 Product A831_B831845*
4	CaM_Ca_n-CaNAB / PP2B[12]	AMPAR_traff_ model0 Accession No. : 59	PP2B Pathway No. : 238	4.97061	2	4	explicit E-S complex	Substrate A835845_ B835845 Product A831_B831845*
5	PKA-active / PKA[23]	AMPAR_traff_ model0 Accession No. : 59	PKA Pathway No. : 240	7.50021	6	4	explicit E-S complex	Substrate A831_B831 Product A831_B831845*
6	PKA-active / PKA[14]	AMPAR_traff_ model0 Accession No. : 59	PKA Pathway No. : 240	7.50021	6	4	explicit E-S complex	Substrate A831_B831 Product A831_B831845*
7	PP1-active_PSD / PP1[16]	AMPAR_traff_ model0 Accession No. : 59	PP1_PSD Pathway No. : 239	0.971451	0.17	4	explicit E-S complex	Substrate A835845_ B835845 Product A831_B831845*

Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details.

Enter a Search String

Molecule Parameter List for A831*_B831*845*

Molecule Parameter List for A831_B831845*