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Molecule Parameter List for tot-auto-PSD

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by color.

Statistics

tot-auto-PSD participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	1	2	2	0	0	0	0

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
AMPAR_traff_ model1	60	Network	Shared_Object_AMPAR_traff_model1,  CaMKII,  CaM,   PP1,  PP2B,  PP1_PSD,   PKA,  AC,  AMPAR,   AMPAR_memb
This is the basic model of AMPAR trafficking bistability. It is based on Hayer and Bhalla, PLoS Comput. Biol. 2005. It includes the degradation and turnover of AMPARs. The CaMKII portion of the model is not bistable.

tot-auto-PSD acting as a Molecule in  AMPAR_traff_model1 Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
tot-auto-PSD	AMPAR_traff_ model1 Accession No. : 60	CaMKII Pathway No. : 245	2	0.01	No

tot-auto-PSD acting as a Summed Molecule in  AMPAR_traff_model1 Network

	Accession Nane	Pathway Name	Target	Input
1	AMPAR_traff_ model1 Accession No. : 60	CaMKII Pathway No. : 245	tot-auto-PSD	CaMKII-thr286-PS D CaMKII***-PSD basal_CaMKII_ PSD
2	AMPAR_traff_ model1 Accession No. : 60	CaMKII Pathway No. : 245	actCaMKII-PSD	CaMKII-thr286-Ca M-PSD CaMKII-CaM-PSD tot-auto-PSD

tot-auto-PSD acting as an Enzyme in  AMPAR_traff_model1 Network

	Enzyme Molecule / Enzyme Activity	Accession Name	Pathway Name	Km (uM)	kcat (s^-1)	Ratio	Enzyme Type	Reagents
1	tot-auto-PSD / auton-305-PSD	AMPAR_traff_ model1 Accession No. : 60	CaMKII Pathway No. : 245	125	6	4	explicit E-S complex	Substrate CaMKII-thr286-PS D Product CaMKII***-PSD
2	tot-auto-PSD / auton-286-PSD	AMPAR_traff_ model1 Accession No. : 60	CaMKII Pathway No. : 245	125.001	0.5	4	explicit E-S complex	Substrate CaMKII-CaM-PSD Product CaMKII-thr286-Ca M-PSD