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Molecule Parameter List for GAP* | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by color. | Statistics | Accession and Pathway Details | |
Accession Name | Accession No. | Accession Type | Pathway Link | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 | 82 | Network | Shared_Object_Ajay_Bhalla_2007_ReacDiff1_1e-13, PKC, MAPK, Ras, CaM, PKM, chain, kinetics, PKC, MAPK, Ras, CaM, PKM, kinetics[1], PKC, MAPK, Ras, CaM, PKM, kinetics[2], PKC, MAPK, Ras, CaM, PKM, kinetics[3], PKC, MAPK, Ras, CaM, PKM, kinetics[4], PKC, MAPK, Ras, CaM, PKM, kinetics[5], PKC, MAPK, Ras, kinetics[6], CaM, PKM, PKC, MAPK, Ras, CaM, PKM, kinetics[7], PKC, MAPK, Ras, CaM, PKM, kinetics[8], PKC, MAPK, Ras, CaM, PKM, kinetics[9], PKC, MAPK, Ras, CaM, PKM, kinetics[10], PKC, MAPK, Ras, CaM, PKM, kinetics[11], PKC, MAPK, Ras, CaM, PKM, kinetics[12], PKC, MAPK, Ras, CaM, PKM, kinetics[13], PKC, MAPK, Ras, CaM, PKM, kinetics[14], PKC, MAPK, Ras, CaM, PKM, kinetics[15], PKC, MAPK, Ras, CaM, PKM, kinetics[16], PKC, MAPK, Ras, CaM, PKM, kinetics[17], PKC, MAPK, Ras, CaM, PKM, kinetics[18], PKC, MAPK, Ras, CaM, PKM, kinetics[19], PKC, MAPK, Ras, CaM, PKM, kinetics[20], PKC, MAPK, Ras, CaM, PKM, kinetics[21], PKC, MAPK, Ras, CaM, PKM, kinetics[22], PKC, MAPK, Ras, CaM, PKM, kinetics[23], PKC, MAPK, Ras, CaM, PKM | This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper.
pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H.
pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I.
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GAP* acting as a Molecule in Ajay_Bhalla_2007_ReacDiff1_1e-13 Network
GAP* acting as a Product of an Enzyme in Ajay_Bhalla_2007_ReacDiff1_1e-13 Network
GAP* acting as a Substrate in a reaction in Ajay_Bhalla_2007_ReacDiff1_1e-13 Network
Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | 1 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 529 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 2 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 3 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 536 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 4 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 5 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 542 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 6 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 7 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 548 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 8 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 9 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 554 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 10 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 11 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 560 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 12 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 13 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 566 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 14 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 15 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 572 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 16 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 17 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 578 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 18 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 19 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 584 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 20 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 21 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 590 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 22 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 23 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 596 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 24 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 25 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 602 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 26 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 27 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 608 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 28 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 29 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 614 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 30 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 31 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 620 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 32 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 33 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 626 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 34 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 35 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 632 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 36 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 37 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 638 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 38 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 39 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 644 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 40 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 41 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 650 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 42 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 43 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 656 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 44 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 45 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 662 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 46 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 47 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 668 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec | 48 | diff | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Pathway No. : 526 | 0.001 (s^-1) | 0.001 (s^-1) | Keq = 1(uM) | 500sec | Substrate GAP*
Product GAP*
| 49 | dephosph-GAP | Ajay_Bhalla_ 2007_ReacDiff1_ 1e-13 Accession No. : 82 | Ras Pathway No. : 674 | 0.1 (s^-1) | 0 (s^-1) | - | - | Substrate GAP*
Product GAP
| | Assume a reasonably good rate for dephosphorylating it, 1/sec |
GAP* acting as a Product in a reaction in Ajay_Bhalla_2007_ReacDiff1_1e-13 Network
Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details. |
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