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Accession
No.		NameSource /
Entry Date		Species /
Tissue		Cell CompartmentMethodology /
Model Implementation
93CaMKIV_submodelPeer-reviewed publication /
 2014-06-10 00:00:00		General Mammalian /
Neuronal		Cytosol, NucleusQuantitative match to experiments /
Exact GENESIS implementation
60
  • AMPAR_traff_
    model1
    		• Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19 00:00:00    		General Mammalian /
    Neuronal    		Synaptic Spine, Postsynaptic DensityQuantitative match to experiments /
    Exact GENESIS implementation
    59
  • AMPAR_traff_
    model0
    		• Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19 00:00:00    		General Mammalian /
    Neuronal    		Synaptic Spine, Postsynaptic DensityQuantitative match to experiments /
    Exact GENESIS implementation
    58EGFR_MAPKBhalla US. Biophys J. (2004) 87(2):745-53. ( peer-reviewed publication ) /
     2004-01-14 00:00:00    		Generic mammalian /
    Neuronal    		SynapseQualitative /
    Exact GENESIS implementation
    92mTOR_pathwayJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-13 00:00:00    		General Mammalian /
    Neuronal    		DendriticQuantitative match to experiments /
    Approximate implementation
    12Stuehr_NOS Santolini J. et al. J Biol Chem. (2001) 276(2):1233-43. ( peer-reviewed publication ) /
     2001-11-12 00:00:00    		Generic mammalian /
    Neuronal ; Expressioned in E.coli    		CytosolQuantitative match to experiments /
    Approximate implementation
    11NOS_IwanagaIn-house. /
     2001-11-12 00:00:00    		Rat; Mammalian /
    Neuronal; Expression in E.coli    		CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    35
  • MAPK-bistability
    -fig1c
    		• Bhalla US et al. Science (2002) 297(5583):1018-23 ( peer-reviewed publication ). /
     2002-11-07 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - NucleusQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    86BDNF_ReceptorJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12 00:00:00    		General Mammalian /
    NIH 3T3 Expression    		Surface, CytosolQualitative /
    Exact GENESIS implementation
    9
  • MAPK_MKP1_
    oscillation
    		• Bhalla US, Iyengar R. Chaos (2001) 11(1):221-226. ( peer-reviewed publication ) /
     2001-11-08 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - NucleusQualitative /
    Exact GENESIS implementation
    83d_fold_modelBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
     2001-11-08 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - NucleusQuantitative match to experiments /
    Exact GENESIS implementation
    4
  • mkp1_feedback_
    effects
    		• Bhalla US et al. Science (2002) 297(5583):1018-23. ( peer-reviewed publication ) /
     2001-11-07 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - nucleusQuantitative match to experiments /
    Exact GENESIS implementation
    27MAPK_oscBoris N. Kholodenko Eur J Biochem. (2000) 267(6):1583-8). ( peer-reviewed publication ) /
     2002-01-22 00:00:00    		Xenopus /
    Oocyte extract    		CytosolHypothetical /
    Mathematically equivalent
    105kholodenkoBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:18:08    		Xenopus /
    Oocyte extract    		cytosolFit to ODE model and experiments /
    HillTau implementation
    30
  • Huang_Ferrell_
    MAPK
    		• Huang CY and Ferrell JE Jr. Proc Natl Acad Sci U S A. (1996) 93(19):10078-83 ( peer-reviewed publication ) /
     2002-01-31 00:00:00    		Xenopus /
    Oocytes extract    		CytosolQuantitative match to experiments /
    Approximate implementation
    44
  • MAPK_Asthagiri_
    no_fb
    		• Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
     2003-02-22 00:00:00    		Chinese hamster (Cricetulus griseus); mammalian /
    Ovary - CHO cell line    		 Surface, cytosolQuantitative match to experiments, Qualitative /
    Mathematically equivalent
    19CondorelliGCCondorelli P, George SC. Biophys J. (2001) 80(5):2110-9). ( peer-reviewed publication  /
     2001-12-25 00:00:00    		Generic mammalian /
    Pulmonary and vascular smooth muscle    		CytosolQuantitative match to experiments /
    Mathematically equivalent
    34cGMP_regulationIn-house  /
     2002-08-27 00:00:00    		Bovine and Sprague-Dawley rats; mammalian /
    Pulmonary, cardiac and expressed in Baculovirus infected Sf21(Spodoptera frugiperda) insect cells    		CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation