 |  |  PP1_CaMKII_PSD |
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Reaction List for pathway AC (Pathway Number 289) | | Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reactions is not considered. |
| | Name | Kf | Kb | Kd | tau | Substrate | Product | | 1 |
CaM-bind-AC1 | 49.9997
(uM^-1 s^-1) | 1
(s^-1) | Kd(bf) = 0.02(uM) | - | CaM-Ca4
AC1
| AC1-CaM
| | | Half-max at 20 nM CaM (Tang et al JBC 266:13 8595-8603 1991 kb/kf = 20 nM = 12000 #/cell so kf = kb/12000 = kb * 8.333e-5 | | 2 |
cAMP_diffusion | 300
(s^-1) | 5.4
(s^-1) | Not applicable** | - | cAMP
| cAMP_in_dend
| | | Represents diffusion, from a volume of 9e-20 to 5e-18. Assuming neck dimensions of 0.1 x 0.1 microns, this works out to a diffusion const of about 270 um^2/sec, which is pretty conservative. It is what cAMP does in frog cilia. | | 3 |
CaM_bind_PDE1 | 719.982
(uM^-1 s^-1) | 5
(s^-1) | Kd(bf) = 0.0069(uM) | - | PDE1
CaM-Ca4
| CaM.PDE1
| | | For olf epi PDE1, affinity is 7 nM. Assume same for brain. Reaction should be pretty fast. Assume kb = 5/sec. Then kf = 5 / (0.007 * 6e5) = 1.2e-3 | | 4 |
dephosph-AC2 | 0.1
(s^-1) | 0
(s^-1) | - | - | AC2*
| AC2
| | | Random rate. | | 5 |
dephosph-PDE | 0.01
(s^-1) | 0
(s^-1) | - | - | cAMP-PDE*
| cAMP-PDE
| | | The rates for this are poorly constrained. In adipocytes (probably a different PDE) the dephosphorylation is complete within 15 min, but there are no intermediate time points so it could be much faster. Identity of phosphatase etc is still unknown. |
Pathway Details Molecule List Enzyme List Reaction List
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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