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Parameters for PKC (Pathway Number 485) Pathway Layout
Pathway Basic Parameters | Pathway Name | PKC | | Pathway Entry Number | 485 | | Accession Number | 81 | | Accession Name | Ajay_bhalla_2007_ReacDiff1_1e-12 | | Species | Rat | | Tissue | Hippocampal CA1 | | CellCompartment | Dendrite | | Related Pathways | 2,
20,
34,
55,
60,
71,
108,
123,
138,
147,
161,
181,
200,
207,
313,
330,
348,
364,
370,
376,
383,
389,
395,
401,
408,
414,
420,
426,
431,
437,
443,
449,
455,
461,
467,
473,
479,
491,
497,
503,
509,
515,
521,
527,
534,
540,
546,
552,
558,
564,
570,
576,
582,
588,
594,
600,
606,
612,
618,
624,
630,
636,
642,
648,
654,
660,
666,
672,
678,
685,
691,
698,
703,
709,
715,
721,
727,
733,
739,
745,
751,
757,
763,
769,
775,
781,
787,
793,
799,
805,
811,
817,
823,
829,
835,
841,
847,
853,
859,
865,
871,
877,
883,
889,
895,
901,
907,
913,
919,
927,
932,
938,
944,
950,
956,
963,
969,
974,
981,
987,
993,
999,
1004,
1010,
1016,
1022,
1028,
1034,
1040,
1046,
1052,
1058,
1064
| | Notes | This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec.
The stimulus file pkm_mapk22_diff_1e-12_Fig4A which was used for the model to replicate Figure 4A from the paper.
This stimulus file pkm_mapk22_diff_1e-12_Fig4G which was used for the model to replicate Figure 4G from the paper
| Statistics Conversion formatThis pathway is part of accession 81 and is completely specified in the file acc81.g.
There is no separate for just this pathway. |
Pathway Detail Molecule List Enzyme List Reaction List
| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details. |
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