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Molecule Parameter List for ip4_1k_cmplx

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
ip4_1k_cmplx participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences1000011

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
  • Osc_Ca_
    IP3metabolism
  • 32Network
    MIPP CaMKII CaM 
    PKC IP3-3K Gq 
    PLCbeta 134_dephos 145_dephos 
    IP4-system IHP-system 1345_dephos 
    CaRegulation Othmer-Tang-model 
    This network models an oscillatory calcium response to GPCR mediated PLCbeta activation, alongwith detailed InsP3 metabolism in the neuron. It is similar to the Osc_Ca_IP3metab model (accession 24) except that some enzymes in the InsP3 metabolism network have been modified to have reversible kinetics rather than Michaelis-Menten kinetics. The modified enzymes belong to the groups: IP4-system, IP3-3K, 145_dephos and 134_dephos. Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316.

    ip4_1k_cmplx acting as a Molecule in  
    Osc_Ca_IP3metabolism Network
    NameAccession NamePathway NameInitial Conc.
    (uM)
    Volume
    (fL)
    Buffered
    ip4_1k_cmplx
  • Osc_Ca_
    IP3metabolism

    Accession No. : 32
  • IP4-system
    Pathway No. : 167
    01000No
    Enzyme complex exclusively modeled to accomodate reversible kinetics as opposed to M-M kinetics. Enzyme reversibility ascertained from dG calculations at -10 kJ/mol that yield a significant back flux from IP5. Also IP4-1K is experimentally reversible: Ho et al, Curr Biol, Mar 2002, 12: 1-20

    ip4_1k_cmplx acting as a Substrate in a reaction in  
    Osc_Ca_IP3metabolism Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    ip4-1k-off
  • Osc_Ca_
    IP3metabolism

    Accession No. : 32
  • IP4-system
    Pathway No. : 167
    0.624
    (s^-1)
    0.056
    (uM^-1 s^-1)
    Kd(cb) = 0.0897(uM)-Substrate
    ip4_1k_cmplx

    Product
    IP3-56K_IP4-1K
    IP5(13456)
    Kf = enzyme Vmax : Yang and Shears, Biochem J 2000, 351, 551-5. Kb ascertained from dG calculations for equilibrium product substrate conditions. Ho et al, Curr Biol 2002, 12: 1-20 report a Vmax for reverse reaction of 0.0656 /sec. But this cannot be exactly incorporated unless Km for InsP5 is also known. Simulations show that incorporation of this reverse reaction can maintain basal InsP4 levels but cannot achieve the stimulated InsP4 levels shown in Ho et al. Hence the separate InsP5 1pase is retained.

    ip4_1k_cmplx acting as a Product in a reaction in  
    Osc_Ca_IP3metabolism Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    ip4-1k-on
  • Osc_Ca_
    IP3metabolism

    Accession No. : 32
  • IP4-system
    Pathway No. : 167
    31.2001
    (uM^-1 s^-1)
    2.496
    (s^-1)
    Kd(bf) = 0.08(uM)-Substrate
    IP3-56K_IP4-1K
    IP4(3456)

    Product
    ip4_1k_cmplx
    Rates derives from enzyme Km and Vmax values: Yang and Shears, Biochem J 2000, 351: 551-555.



    Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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