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Molecule Parameter List for Ca.IP3.IP3R

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network.
The text color of a molecule is highlighted by color.
Statistics
Ca.IP3.IP3R participated asMoleculeSum total ofEnzymeSubstrate of an enzymeProduct of an enzymeSubstrate in ReactionProduct in Reaction
No. of occurrences1100011

Accession and Pathway Details
Accession NameAccession No.Accession TypePathway Link
  • Osc_Ca_
    IP3metabolism
  • 24Network
    MIPP CaMKII CaM 
    PKC IP3-3K Gq 
    PLCbeta 134_dephos 145_dephos 
    IP4-system IHP-system 1345_dephos 
    CaRegulation Othmer-Tang-model 
    This network models an oscillatory calcium response to GPCR mediated PLCbeta activation, alongwith detailed InsP3 metabolism in the neuron. It differs from the NonOsc_Ca_IP3metabolism network in the CaRegulation module and in InsP3 receptor kinetics. Details of InsP3 receptor kinetics have been adapted from the Othmer-Tang model for oscillatory Ca dynamics. Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316.

    Ca.IP3.IP3R acting as a Molecule in  
    Osc_Ca_IP3metabolism Network
    NameAccession NamePathway NameInitial Conc.
    (uM)
    Volume
    (fL)
    Buffered
    Ca.IP3.IP3R
  • Osc_Ca_
    IP3metabolism

    Accession No. : 24
  • Othmer-Tang-mode
    l

    Pathway No. : 133
  • 01000No
    IP3-IP3Receptor complex with Ca bound at the activating site.

    Ca.IP3.IP3R acting as a Summed Molecule in  
    Osc_Ca_IP3metabolism Network
    Accession NamePathway NameTargetInput
  • Osc_Ca_
    IP3metabolism

    Accession No. : 24
  • Othmer-Tang-mode
    l

    Pathway No. : 133
  • mirror_Ca.IP3.IP3RCa.IP3.IP3R

    Ca.IP3.IP3R acting as a Substrate in a reaction in  
    Osc_Ca_IP3metabolism Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    bind_inact_Ca
  • Osc_Ca_
    IP3metabolism

    Accession No. : 24
  • Othmer-Tang-mode
    l

    Pathway No. : 133
  • 1.8001
    (uM^-1 s^-1)
    0.21
    (s^-1)
    Kd(bf) = 0.1167(uM)-Substrate
    Ca
    Ca.IP3.IP3R

    Product
    Ca2.IP3.IP3R
    from the O-T model in Tang et al, Biophys J 70, 1996

    Ca.IP3.IP3R acting as a Product in a reaction in  
    Osc_Ca_IP3metabolism Network
    Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.
    NameAccession NamePathway NameKfKbKdtauReagents
    bind_act_Ca
  • Osc_Ca_
    IP3metabolism

    Accession No. : 24
  • Othmer-Tang-mode
    l

    Pathway No. : 133
  • 15
    (uM^-1 s^-1)
    1.65
    (s^-1)
    Kd(bf) = 0.11(uM)-Substrate
    Ca
    IP3.IP3R

    Product
    Ca.IP3.IP3R
    from the O-T model in Tang et al, Biophys J 70, 1996



    Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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