Accession Name | Accession No. | Accession Type | Pathway Link |
Ajay_Bhalla_ 2007_ReacDiff3 | 84 | Network | Shared_Object_Ajay_Bhalla_2007_ReacDiff3, PKC, PLA2, MAPK, PLA2, Ras, CaM, chain, kinetics, PKC, MAPK, Ras, CaM, kinetics[1], PKC, PLA2, MAPK, Ras, CaM, kinetics[2], PKC, PLA2, MAPK, Ras, CaM, kinetics[3], PKC, PLA2, MAPK, Ras, CaM, kinetics[4], PKC, PLA2, MAPK, Ras, CaM, kinetics[5], PKC, PLA2, MAPK, Ras, MAPK, CaM, kinetics[6], PKC, PLA2, MAPK, Ras, CaM, kinetics[7], PKC, PLA2, MAPK, Ras, CaM, PKC, kinetics[8], PLA2, MAPK, Ras, CaM, kinetics[9], PKC, PLA2, MAPK, Ras, CaM, kinetics[10], PKC, PLA2, MAPK, Ras, CaM, kinetics[11], PKC, PLA2, MAPK, Ras, CaM, kinetics[12], PKC, PLA2, Ras, CaM, kinetics[13], PKC, PLA2, MAPK, Ras, CaM, kinetics[14], PKC, PLA2, MAPK, Ras, CaM, kinetics[15], PKC, PLA2, MAPK, Ras, kinetics[16], CaM, PKC, PLA2, MAPK, Ras, CaM, kinetics[17], PKC, PLA2, MAPK, Ras, CaM, kinetics[18], PKC, PLA2, MAPK, Ras, CaM, kinetics[19], PKC, PLA2, MAPK, Ras, CaM, kinetics[20], PKC, PLA2, MAPK, Ras, CaM, kinetics[21], PKC, PLA2, MAPK, Ras, CaM, kinetics[22], PKC, PLA2, MAPK, Ras, CaM, kinetics[23], PKC, PLA2, MAPK, Ras, CaM |
This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_bistable model. The original single-compartment model is repeated 25 times.
In addition, a subset (33 out of 50) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. Here D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) so the kf and kb of this reaction for these 10 micron compartments are both 0.001/sec.
The basal calcium level in this model is held at 95 nM which is rather close to threshold for the flip to the active state. This is necessary to sustain active propagation of activation.
The stimulus file bis6-propgn_D1e-13_FigEF which was used for the model to replicate Figure 4E and 4F from the paper. |
Name | Accession Name | Pathway Name | Initial Conc. (uM) | Volume (fL) | Buffered |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff3 Pathway No. : 918 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics Pathway No. : 926 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[1] Pathway No. : 931 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[2] Pathway No. : 937 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[3] Pathway No. : 943 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[4] Pathway No. : 949 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[5] Pathway No. : 955 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[6] Pathway No. : 962 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[7] Pathway No. : 968 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[8] Pathway No. : 975 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[9] Pathway No. : 980 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[10] Pathway No. : 986 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[11] Pathway No. : 992 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[12] Pathway No. : 998 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[13] Pathway No. : 1003 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[14] Pathway No. : 1009 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[15] Pathway No. : 1015 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[16] Pathway No. : 1020 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[17] Pathway No. : 1027 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[18] Pathway No. : 1033 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[19] Pathway No. : 1039 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[20] Pathway No. : 1045 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[21] Pathway No. : 1051 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[22] Pathway No. : 1057 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
MKP-1 | Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[23] Pathway No. : 1063 | 0.024 | 125.7 | No |
MKP-1 dephosphoryates and inactivates MAPK in vivo: Sun et al Cell 75 487-493 1993. Levels of MKP-1 are regulated, and rise in 1 hour. Kinetics from Charles et al PNAS 90:5292-5296 1993. They refer to Charles et al Oncogene 7 187-190 who show that half-life of MKP1/3CH134 is 40 min. 80% deph of MAPK in 20 min Sep 17 1997: CoInit now 0.4x to 0.0032. See parm searches from jun96 on. |
| Enzyme Molecule / Enzyme Activity | Accession Name | Pathway Name | Km (uM) | kcat (s^-1) | Ratio | Enzyme Type | Reagents |
1 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff3 Pathway No. : 918 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
2 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | Shared_Object_ Ajay_Bhalla_ 2007_ReacDiff3 Pathway No. : 918 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
3 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics Pathway No. : 926 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
4 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics Pathway No. : 926 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
5 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[1] Pathway No. : 931 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
6 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[1] Pathway No. : 931 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
7 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[2] Pathway No. : 937 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
8 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[2] Pathway No. : 937 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
9 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[3] Pathway No. : 943 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
10 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[3] Pathway No. : 943 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
11 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[4] Pathway No. : 949 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
12 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[4] Pathway No. : 949 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
13 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[5] Pathway No. : 955 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
14 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[5] Pathway No. : 955 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
15 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[6] Pathway No. : 962 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
16 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[6] Pathway No. : 962 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
17 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[7] Pathway No. : 968 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
18 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[7] Pathway No. : 968 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
19 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[8] Pathway No. : 975 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
20 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[8] Pathway No. : 975 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
21 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[9] Pathway No. : 980 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
22 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[9] Pathway No. : 980 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
23 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[10] Pathway No. : 986 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
24 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[10] Pathway No. : 986 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
25 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[11] Pathway No. : 992 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
26 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[11] Pathway No. : 992 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
27 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[12] Pathway No. : 998 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
28 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[12] Pathway No. : 998 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
29 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[13] Pathway No. : 1003 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
30 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[13] Pathway No. : 1003 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
31 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[14] Pathway No. : 1009 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
32 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[14] Pathway No. : 1009 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
33 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[15] Pathway No. : 1015 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
34 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[15] Pathway No. : 1015 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
35 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[16] Pathway No. : 1020 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
36 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[16] Pathway No. : 1020 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
37 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[17] Pathway No. : 1027 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
38 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[17] Pathway No. : 1027 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
39 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[18] Pathway No. : 1033 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
40 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[18] Pathway No. : 1033 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
41 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[19] Pathway No. : 1039 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
42 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[19] Pathway No. : 1039 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
43 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[20] Pathway No. : 1045 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
44 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[20] Pathway No. : 1045 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
45 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[21] Pathway No. : 1051 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
46 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[21] Pathway No. : 1051 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
47 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[22] Pathway No. : 1057 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
48 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[22] Pathway No. : 1057 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |
49 | MKP-1 / MKP1-tyr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[23] Pathway No. : 1063 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK-tyr
Product MAPK
|
| The original kinetics have been modified to obey the k2 = 4 * k3 rule, while keeping kcat and Km fixed. As noted in the NOTES, the only constraining data point is the time course of MAPK dephosphorylation, which this model satisfies. It would be nice to have more accurate estimates of rate consts and MKP-1 levels from the literature. Effective Km : 67 nM kcat = 1.43 umol/min/mg |
50 | MKP-1 / MKP1-thr-deph
| Ajay_Bhalla_ 2007_ReacDiff3 Accession No. : 84 | kinetics[23] Pathway No. : 1063 | 0.133333 | 4 | 4 | explicit E-S complex | Substrate MAPK*
Product MAPK-tyr
|
| See MKP1-tyr-deph |