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Accession
No.		NameSource /
Entry Date		Species /
Tissue		Cell CompartmentMethodology /
Model Implementation
110aut6Bhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.  /
 2022-10-01 00:02:13		Rodent /
Brain		SynapseQuantitative fit to experiments /
HillTau implementation
111oscBhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.  /
 2022-10-01 00:05:03		Generic /
cytosolAbstract phenomenological model /
HillTau implementation
112conv2ndOrderBhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.  /
 2022-10-01 00:07:32		Generic /
cytosolFit to elementary ODE model /
HillTau implementation
113
  • syn_prot_
    minimal
    		• Bhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.  /
     2022-10-01 00:09:57    		Rodent /
    Brain    		SynapseReduced quantitative fit to experiments /
    HillTau implementation
    101
  • exc_tau_
    baseline
    		• Bhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:10:56    		Generic /
    		cytosolFit to elementary ODE model /
    HillTau implementation
    100inhBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:08:48    		Generic /
    		cytosolFit to elementary ODE model /
    HillTau implementation
    99convBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 17:54:52    		Generic /
    		cytosolFit to elementary ODE model /
    HillTau implementation
    98exc2ndOrderBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 17:52:22    		Generic /
    		cytosolFit to elementary ODE model /
    HillTau implementation
    97excBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 15:13:55    		Generic /
    		cytosolFit to elementary ODE model /
    HillTau implementation
    15
  • sGC_Stone_
    Marletta
    		• Stone JR, Marletta MA. Biochemistry (1996) 35(4):1093-9. ( peer-reviewed publication ) /
     2001-12-12 00:00:00    		Bovine /
    Lungs    		CytosolQuantitative match to experiments /
    Mathematically equivalent
    19CondorelliGCCondorelli P, George SC. Biophys J. (2001) 80(5):2110-9). ( peer-reviewed publication  /
     2001-12-25 00:00:00    		Generic mammalian /
    Pulmonary and vascular smooth muscle    		CytosolQuantitative match to experiments /
    Mathematically equivalent
    27MAPK_oscBoris N. Kholodenko Eur J Biochem. (2000) 267(6):1583-8). ( peer-reviewed publication ) /
     2002-01-22 00:00:00    		Xenopus /
    Oocyte extract    		CytosolHypothetical /
    Mathematically equivalent
    44
  • MAPK_Asthagiri_
    no_fb
    		• Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
     2003-02-22 00:00:00    		Chinese hamster (Cricetulus griseus); mammalian /
    Ovary - CHO cell line    		 Surface, cytosolQuantitative match to experiments, Qualitative /
    Mathematically equivalent
    45
  • MAPK_Asthagiri_
    adapt_fb
    		• Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
     2003-02-22 00:00:00    		Chinese hamster (Cricetulus griseus); mammalian /
    Ovary - CHO cell line    		 Surface, cytosolQuantitative match to experiments, Qualitative /
    Mathematically equivalent
    52
  • EGFR_Signaling_
    pathway
    		• Quantification of Short Term Signaling by the EGFR Kholodenko et al, The J Biol Chem. , Vol 274, No. 42, Issue of October 15, pp. 30169 - 30181, 1999. ( peer-reviewed publication ) /
     2003-05-17 00:00:00    		Harlan Sprague Dawley rat; mammalian /
    Hepatocytes    		Cell membrane + cytosolQualitative /
    Mathematically equivalent
    55ChemotaxisBray et al. Mol.Biol.Cell (1993) 4(5): 469-482. ( peer-reviewed publication ) /
     2003-06-10 00:00:00    		E. Coli /
    -    		Cell membrane + cytosolQuantitative match to experiments /
    Mathematically equivalent
    57ChemotaxisBray et al. Mol.Biol.Cell (1993) 4(5): 469-482. ( peer-reviewed publication ) /
     2003-06-10 00:00:00    		E. Coli /
    -    		Cell membrane + cytosolQualitative /
    Mathematically equivalent
    96BCMBhalla PLoS Comput Biol 2021 (peer reviewed publication) /
     2022-05-19 00:00:00    		General Mammalian /
    Neuronal    		Cell membrane/cytosolQualitative /
    Reduced ODE model