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Molecule Parameter List for Anchor

The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by color.

Statistics

Anchor participated as	Molecule	Sum total of	Enzyme	Substrate of an enzyme	Product of an enzyme	Substrate in Reaction	Product in Reaction
No. of occurrences	1	0	0	0	0	4	4

Accession and Pathway Details

Accession Name	Accession No.	Accession Type	Pathway Link
AMPAR_CaMKII_ weak_coupling	65	Network	Shared_Object_AMPAR_CaMKII_weak_coupling,  CaMKII,  CaM,   PP1,  PP2B,  PP1_PSD,   AMPAR,  PKA,  AC,   AMPAR_memb,  PP1_CaMKII_PSD,  CaMKII_PSD
This is a model of weak coupling between the AMPAR traffikcing bistability, and the CaMKII autophosphorylation bistability. In this model, there are three stable states: Both off, AMPAR on, or both on. The fourth possible state: CaMKII on but AMPAR off, is not truly stable, since over the course of hours the AMPAR also turns on.

Anchor acting as a Molecule in  AMPAR_CaMKII_weak_coupling Network

Name	Accession Name	Pathway Name	Initial Conc. (uM)	Volume (fL)	Buffered
Anchor	AMPAR_CaMKII_ weak_coupling Accession No. : 65	Shared_Object_ AMPAR_CaMKII_ weak_coupling Pathway No. : 281	27.3333	0.01	No

Anchor acting as a Substrate in a reaction in  AMPAR_CaMKII_weak_coupling Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

	Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
1	exo_reg**	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0002 (#^-1 s^-1)	0.008 (s^-1)	Not applicable**	-	Substrate A835*845*_ B835*845* Anchor Product A835*845*_ B835*845*
2	exo_reg_*	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0002 (#^-1 s^-1)	0.008 (s^-1)	Not applicable**	-	Substrate A845*_B831*845* Anchor Product A845*_B831*845*
3	exo_reg*_	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0002 (#^-1 s^-1)	0.008 (s^-1)	Not applicable**	-	Substrate A831*845*_B845* Anchor Product A831*845*_B845*
4	exo_reg__	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0002 (#^-1 s^-1)	0.008 (s^-1)	Not applicable**	-	Substrate A845*_B845* Anchor Product A845*_B845*
	Exo rates are scaled from earlier model versions to account for binding of anchor. We have about 200 molecules of anchor in the whole model. Here we select rates to give us a max of about 150 molecules of GluR at the synapse.

** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration

Anchor acting as a Product in a reaction in  AMPAR_CaMKII_weak_coupling Network

Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reaction are not consider.

	Name	Accession Name	Pathway Name	Kf	Kb	Kd	tau	Reagents
1	recycle**	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0008 (s^-1)	0 (#^-1 s^-1)	Not applicable**	-	Substrate A831*_B831* Product A831*_B831* Anchor
2	recycle_*	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0008 (s^-1)	0 (#^-1 s^-1)	Not applicable**	-	Substrate A_B831* Product A_B831* Anchor
3	recycle*_	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0008 (s^-1)	0 (#^-1 s^-1)	Not applicable**	-	Substrate A831*_B Product A831*_B Anchor
4	recycle__	AMPAR_CaMKII_ weak_coupling Accession No. : 65	AMPAR Pathway No. : 287	0.0008 (s^-1)	0 (#^-1 s^-1)	Not applicable**	-	Substrate A_B Product A_B Anchor

** This is a trasport reation between compartments of different volumes. Therefore Kd is not applicable. Please Note Kf, Kb units are in number of molecules instead of concentration