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Reaction List for pathway AMPAR (Pathway Number 287) |
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reactions is not considered. |
| Name | Kf | Kb | Kd | tau | Substrate | Product | |
| 1 | degrade** | 0 (s^-1) | 0 (s^-1) | - | - | B835*845* | AMPAR_deg |
| 2 | degrade*_ | 0 (s^-1) | 0 (s^-1) | - | - | A831*845*_B845* | AMPAR_deg |
| 3 | degrade_* | 0 (s^-1) | 0 (s^-1) | - | - | A845*_B831*845* | AMPAR_deg |
| 4 | degrade__ | 0 (s^-1) | 0 (s^-1) | - | - | A845*_B845* | AMPAR_deg |
| 5 | exo_reg** | 0.0002 (#^-1 s^-1) | 0.008 (s^-1) | Not applicable** | - | B835*845* Anchor | B835*845* |
| 6 | exo_reg*_ | 0.0002 (#^-1 s^-1) | 0.008 (s^-1) | Not applicable** | - | A831*845*_B845* Anchor | A831*845*_B845* |
| 7 | exo_reg_* | 0.0002 (#^-1 s^-1) | 0.008 (s^-1) | Not applicable** | - | A845*_B831*845* Anchor | A845*_B831*845* |
| 8 | exo_reg__ | 0.0002 (#^-1 s^-1) | 0.008 (s^-1) | Not applicable** | - | A845*_B845* Anchor | A845*_B845* |
| Exo rates are scaled from earlier model versions to account for binding of anchor. We have about 200 molecules of anchor in the whole model. Here we select rates to give us a max of about 150 molecules of GluR at the synapse. | |||||||
| 9 | recycle** | 0.0008 (s^-1) | 0 (#^-1 s^-1) | Not applicable** | - | A831*_B831* | A831*_B831* Anchor |
| 10 | recycle*_ | 0.0008 (s^-1) | 0 (#^-1 s^-1) | Not applicable** | - | A831*_B | A831*_B Anchor |
| 11 | recycle_* | 0.0008 (s^-1) | 0 (#^-1 s^-1) | Not applicable** | - | A_B831* | A_B831* Anchor |
| 12 | recycle__ | 0.0008 (s^-1) | 0 (#^-1 s^-1) | Not applicable** | - | A_B | A_B Anchor |
| Pathway Detail | Molecule List | Enzyme List | Reaction List |