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Accession Type:
Network
AMPAR_traff_
model1
Shared_Object_
AMPAR_traff_
model1
CaMKII
CaM
 Molecule
 Reaction
PP1
PP2B
PP1_PSD
PKA
AC
AMPAR
AMPAR_memb

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Parameters for CaM (Pathway Number 246)

Pathway Layout

Pathway Basic Parameters

Pathway NameCaM
Pathway Entry Number 246
Accession Number 60
Accession Name AMPAR_traff_model1
Species General Mammalian
Tissue Neuronal
CellCompartmentSynaptic Spine, Postsynaptic Density
Related Pathways 14, 27, 81, 107, 122, 146, 160, 173, 203, 217, 236, 259, 265, 273, 283, 323, 340, 358, 368, 373, 379, 386, 392, 398, 405, 411, 418, 423, 428, 434, 440, 446, 452, 458, 464, 470, 476, 482, 488, 494, 500, 506, 512, 518, 524, 530, 537, 543, 549, 555, 561, 568, 573, 579, 585, 591, 597, 603, 609, 615, 621, 627, 633, 639, 645, 651, 657, 663, 669, 675, 681, 688, 695, 701, 706, 712, 718, 724, 730, 736, 742, 748, 754, 760, 766, 772, 778, 784, 790, 796, 802, 808, 814, 820, 826, 832, 838, 844, 850, 856, 862, 868, 874, 880, 886, 892, 898, 904, 910, 916, 924, 930, 936, 942, 948, 954, 961, 967, 973, 979, 985, 991, 997, 1002, 1008, 1014, 1021, 1026, 1032, 1038, 1044, 1050, 1056, 1062, 1068, 1094
Notes  This is the basic model of AMPAR trafficking bistability. It is based on Hayer and Bhalla, PLoS Comput. Biol. 2005. It includes the degradation and turnover of AMPARs. The CaMKII portion of the model is not bistable.

Statistics

Enzyme sites
14
0
11

Conversion format

This pathway is part of accession 60 and is completely specified in the file acc60.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc60.g   
MATLAB format    acc60.m   
SBML format    acc60.xml   


Pathway Detail   Molecule List  Enzyme List   Reaction List  


Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR
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