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Parameters for CaM (Pathway Number 573)
Pathway Layout
Pathway Basic Parameters
| Pathway Name | CaM |
| Pathway Entry Number | 573 |
| Accession Number | 82 |
| Accession Name | Ajay_Bhalla_2007_ReacDiff1_1e-13 |
| Species | Rat |
| Tissue | Hippocampal CA1 |
| CellCompartment | Dendrite |
| Related Pathways | 14, 27, 81, 107, 122, 146, 160, 173, 203, 217, 236, 246, 259, 265, 273, 283, 323, 340, 358, 368, 373, 379, 386, 392, 398, 405, 411, 418, 423, 428, 434, 440, 446, 452, 458, 464, 470, 476, 482, 488, 494, 500, 506, 512, 518, 524, 530, 537, 543, 549, 555, 561, 568, 579, 585, 591, 597, 603, 609, 615, 621, 627, 633, 639, 645, 651, 657, 663, 669, 675, 681, 688, 695, 701, 706, 712, 718, 724, 730, 736, 742, 748, 754, 760, 766, 772, 778, 784, 790, 796, 802, 808, 814, 820, 826, 832, 838, 844, 850, 856, 862, 868, 874, 880, 886, 892, 898, 904, 910, 916, 924, 930, 936, 942, 948, 954, 961, 967, 973, 979, 985, 991, 997, 1002, 1008, 1014, 1021, 1026, 1032, 1038, 1044, 1050, 1056, 1062, 1068, 1094, 1109 |
| Notes | This is a 25-compartment reaction-diffusion version of the Ajay_Bhalla_2007_PKM model. The original single-compartment model is repeated 25 times. In addition, a subset (27 out of 42) molecules can diffuse between compartments. Diffusion is implemented as a reaction between corresponding molecules in neighboring compartments. For D = 1e-12 m^2/sec (i.e., 1 micron^2/sec ) the kf and kb of this reaction for these 10 micron compartments are both 0.01/sec. For D = 1e-13 m^2/sec (i.e., 0.1 micron^2/sec ) the kf and kb are 0.001/sec. The stimulus file pkm_mapk22_diff_1e-13_Fig4B which was used for the model to replicate Figure 4B from the paper. pkm_mapk22_diff_1e-13_Fig4H replicate Figure 4H. pkm_mapk22_diff_1e-13_Fig4I replicate Figure 4I. |
Statistics
Enzyme sites | ||
5 | 0 | 4 |
Conversion format
| This pathway is part of accession 82 and is completely specified in the file acc82.g. There is no separate file for just this pathway. |
| Format | File |
| Native Format (GENESIS format) | acc82.g |
| Pathway Detail | Molecule List | Enzyme List | Reaction List |