| | Molecule Name/
Site Name | Km (uM) | kcat (1/s) | Ratio
(k2/k3) | Enzyme Type | Substrate | Product |
| 1 |
Enzyme Activity:
act_
transcription
Enzyme Molecule:
nuc_MAPK* | 4.00002 | 0.0008 | 4 | explicit E-S complex | Nucleotides
| MKP1-RNA
|
| | This is a 'black box' representation of a lot of steps. Constraint provided by determining rate of formation of MKP-1. |
| 2 |
Enzyme Activity:
MAPKKthr
Enzyme Molecule:
MAPKK* | 0.0462963 | 0.15 | 4 | explicit E-S complex | MAPK-tyr
| MAPK*
|
| | Rate consts same as for MAPKKtyr. |
| 3 |
Enzyme Activity:
MAPKKtyr
Enzyme Molecule:
MAPKK* | 0.0462963 | 0.15 | 4 | explicit E-S complex | MAPK
| MAPK-tyr
|
| | The actual MAPKK is 2 forms from Seger et al JBC 267:20 14373(1992) Vmax = 150nmol/min/mg From Haystead et al FEBS 306(1):17-22 we get Km=46.6nM for at least one of the phosphs. Putting these together: k3=0.15/sec, ratio of 4 to get k2=0.6. k1=0.75/46.6nM=2.7e-5 In terms of Michaelis-Menten rates, Km = 0.046, Vmax = 0.15, ratio = 4. |
| 4 |
Enzyme Activity:
MKP1*-thr-deph
Enzyme Molecule:
MKP-1** | 0.0666667 | 1 | 4 | Classical Michaelis-Menten
V = Etot.S.Kcat/Km+S | MAPK*
| MAPK-tyr
|
| | 3 Feb 2000. Same rates as MKP1 |
| 5 |
Enzyme Activity:
MKP1*-tyr-deph
Enzyme Molecule:
MKP-1** | 0.0666667 | 1 | 4 | Classical Michaelis-Menten
V = Etot.S.Kcat/Km+S | MAPK-tyr
| MAPK
|
| | 3 Feb 2000. Same rates as MKP-1. |
| 6 |
Enzyme Activity:
Raf*-GTP-Ras.1
Enzyme Molecule:
Raf*-GTP-Ras | 0.159091 | 0.105 | 4 | explicit E-S complex | MAPKK
| MAPKK-ser
|
| | Kinetics are the same as for the craf-1* activity, ie., k1=1.1e-6, k2=.42, k3 =0.105 These are based on Force et al PNAS USA 91 1270-1274 1994. They report Km for MAPKK of 0.8 uM. and a Vmax of ~500 fm/min/ug. These parms cannot reach the observed 4X stimulation of MAPK. So we increase the affinity, ie, raise k1 5x to 5.5e-6 which is equivalent to 5-fold reduction in Km to about 0.16. This is, of course, dependent on the amount of MAPKK present. |
| 7 |
Enzyme Activity:
Raf*-GTP-Ras.2
Enzyme Molecule:
Raf*-GTP-Ras | 0.159091 | 0.105 | 4 | explicit E-S complex | MAPKK-ser
| MAPKK*
|
| | Same kinetics as other c-raf activated forms. See Force et al PNAS 91 1270-1274 1994. |
| 8 |
Enzyme Activity:
RGR.1
Enzyme Molecule:
RGR | 0.159091 | 0.105 | 4 | explicit E-S complex | MAPKK
| MAPKK-ser
|
| | Kinetics are the same as for the craf-1* activity, ie., k1=5.5e-6, k2=.42, k3 =0.105 These are based on Force et al PNAS USA 91 1270-1274 1994. |
| 9 |
Enzyme Activity:
RGR.2
Enzyme Molecule:
RGR | 0.159091 | 0.105 | 4 | explicit E-S complex | MAPKK-ser
| MAPKK*
|
| | Same kinetics as other c-raf activated forms. See Force et al PNAS 91 1270-1274 1994. k1 = 5.5e-6, k2 = .42, k3 = 0.105 |
